Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNA5SP210-201ENST00000391034 120 ntBASIC3.65□□□□□ -1.83
SENP3Q9H4L4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.65□□□□□ -1.83
SENP3Q9H4L4 Y_RNA.698-201ENST00000516798 118 ntBASIC3.64□□□□□ -1.83
SENP3Q9H4L4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
SENP3Q9H4L4 RNU6-1111P-201ENST00000391118 107 ntBASIC3.63□□□□□ -1.83
SENP3Q9H4L4 MIR1468-201ENST00000410600 86 ntBASIC3.63□□□□□ -1.83
SENP3Q9H4L4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SENP3Q9H4L4 MIR148B-201ENST00000362252 99 ntBASIC3.61□□□□□ -1.83
SENP3Q9H4L4 AC245884.12-201ENST00000615364 59 ntBASIC3.61□□□□□ -1.83
SENP3Q9H4L4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
SENP3Q9H4L4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
SENP3Q9H4L4 MIR26A1-201ENST00000362205 77 ntBASIC3.6□□□□□ -1.83
SENP3Q9H4L4 MIR573-201ENST00000384964 99 ntBASIC3.6□□□□□ -1.83
SENP3Q9H4L4 RNA5SP268-201ENST00000516828 124 ntBASIC3.6□□□□□ -1.83
SENP3Q9H4L4 MIR4498-201ENST00000577599 66 ntBASIC3.6□□□□□ -1.83
SENP3Q9H4L4 MIR4299-201ENST00000577899 72 ntBASIC3.6□□□□□ -1.83
SENP3Q9H4L4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC3.6□□□□□ -1.83
SENP3Q9H4L4 VTRNA1-1-201ENST00000363120 99 ntBASIC3.59□□□□□ -1.83
SENP3Q9H4L4 RNU6-300P-201ENST00000459080 104 ntBASIC3.59□□□□□ -1.83
SENP3Q9H4L4 SNORA70.22-201ENST00000517160 124 ntBASIC3.59□□□□□ -1.83
SENP3Q9H4L4 RNU1-17P-201ENST00000363022 152 ntBASIC3.58□□□□□ -1.84
SENP3Q9H4L4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.57□□□□□ -1.84
SENP3Q9H4L4 MIR4752-201ENST00000579672 72 ntBASIC3.57□□□□□ -1.84
SENP3Q9H4L4 MIR6873-201ENST00000622788 63 ntBASIC3.57□□□□□ -1.84
SENP3Q9H4L4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SENP3Q9H4L4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.56□□□□□ -1.84
SENP3Q9H4L4 SNORA36.1-201ENST00000363424 132 ntBASIC3.56□□□□□ -1.84
SENP3Q9H4L4 RNA5SP282-201ENST00000516355 108 ntBASIC3.56□□□□□ -1.84
SENP3Q9H4L4 MIR1273D-201ENST00000577266 86 ntBASIC3.56□□□□□ -1.84
SENP3Q9H4L4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC3.55□□□□□ -1.84
SENP3Q9H4L4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.55□□□□□ -1.84
SENP3Q9H4L4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SENP3Q9H4L4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SENP3Q9H4L4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
SENP3Q9H4L4 RNU7-188P-201ENST00000517063 64 ntBASIC3.54□□□□□ -1.84
SENP3Q9H4L4 MIR7107-201ENST00000611489 80 ntBASIC3.54□□□□□ -1.84
SENP3Q9H4L4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SENP3Q9H4L4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SENP3Q9H4L4 RNA5SP492-201ENST00000411330 114 ntBASIC3.52□□□□□ -1.85
SENP3Q9H4L4 AL356320.1-201ENST00000429616 163 ntBASIC3.52□□□□□ -1.85
SENP3Q9H4L4 SNORD12-201ENST00000391002 90 ntBASIC3.51□□□□□ -1.85
SENP3Q9H4L4 MIR3605-201ENST00000583214 100 ntBASIC3.51□□□□□ -1.85
SENP3Q9H4L4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.51□□□□□ -1.85
SENP3Q9H4L4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.5□□□□□ -1.85
SENP3Q9H4L4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
SENP3Q9H4L4 RNU6-258P-201ENST00000390884 101 ntBASIC3.5□□□□□ -1.85
SENP3Q9H4L4 MIR7153-201ENST00000637758 57 ntBASIC3.5□□□□□ -1.85
SENP3Q9H4L4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SENP3Q9H4L4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SENP3Q9H4L4 SNORA64-201ENST00000384674 134 ntBASIC3.49□□□□□ -1.85
SENP3Q9H4L4 MIR524-201ENST00000385242 87 ntBASIC3.49□□□□□ -1.85
SENP3Q9H4L4 AC108667.1-201ENST00000428618 249 ntBASIC3.49□□□□□ -1.85
SENP3Q9H4L4 AC002429.1-201ENST00000437672 148 ntBASIC3.49□□□□□ -1.85
SENP3Q9H4L4 SNORD115-23-201ENST00000364461 82 ntBASIC3.48□□□□□ -1.85
SENP3Q9H4L4 RNU6-1036P-201ENST00000383959 104 ntBASIC3.48□□□□□ -1.85
SENP3Q9H4L4 AC026436.1-201ENST00000510537 270 ntBASIC3.48□□□□□ -1.85
SENP3Q9H4L4 RNU6-175P-201ENST00000516896 107 ntBASIC3.48□□□□□ -1.85
SENP3Q9H4L4 MIR8070-201ENST00000616510 88 ntBASIC3.48□□□□□ -1.85
SENP3Q9H4L4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SENP3Q9H4L4 MIR499A-201ENST00000384903 122 ntBASIC3.46□□□□□ -1.86
SENP3Q9H4L4 MIR222-201ENST00000384992 110 ntBASIC3.45□□□□□ -1.86
SENP3Q9H4L4 RNY1P9-201ENST00000532431 109 ntBASIC3.45□□□□□ -1.86
SENP3Q9H4L4 RNU1-78P-201ENST00000391248 165 ntBASIC3.44□□□□□ -1.86
SENP3Q9H4L4 RNU6-295P-201ENST00000516901 104 ntBASIC3.44□□□□□ -1.86
SENP3Q9H4L4 AC104408.1-201ENST00000605241 170 ntBASIC3.44□□□□□ -1.86
SENP3Q9H4L4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC3.43□□□□□ -1.86
SENP3Q9H4L4 RNU6-1091P-201ENST00000363945 107 ntBASIC3.42□□□□□ -1.86
SENP3Q9H4L4 AC092185.1-201ENST00000491371 97 ntBASIC3.42□□□□□ -1.86
SENP3Q9H4L4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
SENP3Q9H4L4 MIR548T-201ENST00000408369 74 ntBASIC3.41□□□□□ -1.86
SENP3Q9H4L4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.4□□□□□ -1.86
SENP3Q9H4L4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
SENP3Q9H4L4 Y_RNA.699-201ENST00000516803 93 ntBASIC3.4□□□□□ -1.87
SENP3Q9H4L4 AC084768.2-201ENST00000622736 221 ntBASIC3.4□□□□□ -1.87
SENP3Q9H4L4 FABP5P4-201ENST00000437203 171 ntBASIC3.39□□□□□ -1.87
SENP3Q9H4L4 MIR5706-201ENST00000579841 80 ntBASIC3.39□□□□□ -1.87
SENP3Q9H4L4 MIR6888-201ENST00000621977 67 ntBASIC3.39□□□□□ -1.87
SENP3Q9H4L4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SENP3Q9H4L4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SENP3Q9H4L4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC3.38□□□□□ -1.87
SENP3Q9H4L4 SNORA27.2-201ENST00000363365 126 ntBASIC3.38□□□□□ -1.87
SENP3Q9H4L4 RNA5SP325-201ENST00000363756 130 ntBASIC3.38□□□□□ -1.87
SENP3Q9H4L4 RNU6-805P-201ENST00000365643 106 ntBASIC3.38□□□□□ -1.87
SENP3Q9H4L4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SENP3Q9H4L4 snoU13.18-201ENST00000459483 104 ntBASIC3.38□□□□□ -1.87
SENP3Q9H4L4 snoR1.1-201ENST00000628177 80 ntBASIC3.38□□□□□ -1.87
SENP3Q9H4L4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SENP3Q9H4L4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
SENP3Q9H4L4 RNU6-361P-201ENST00000364454 107 ntBASIC3.37□□□□□ -1.87
SENP3Q9H4L4 RNU6-1238P-201ENST00000517215 102 ntBASIC3.37□□□□□ -1.87
SENP3Q9H4L4 MIR4422-201ENST00000581938 83 ntBASIC3.37□□□□□ -1.87
SENP3Q9H4L4 RNA5SP380-201ENST00000517190 98 ntBASIC3.36□□□□□ -1.87
SENP3Q9H4L4 U8.9-201ENST00000365667 134 ntBASIC3.35□□□□□ -1.87
SENP3Q9H4L4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.35□□□□□ -1.87
SENP3Q9H4L4 RNU6-321P-201ENST00000410912 106 ntBASIC3.35□□□□□ -1.87
SENP3Q9H4L4 snoU13.31-201ENST00000607291 104 ntBASIC3.35□□□□□ -1.87
SENP3Q9H4L4 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.35□□□□□ -1.87
SENP3Q9H4L4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SENP3Q9H4L4 AC008834.1-201ENST00000511612 175 ntBASIC3.34□□□□□ -1.87
SENP3Q9H4L4 RNU1-29P-201ENST00000606574 126 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 233.8 ms