Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
MSH5O43196 U7.7-201ENST00000459276 60 ntBASIC3.58□□□□□ -1.84
MSH5O43196 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC3.58□□□□□ -1.84
MSH5O43196 MIR4432-201ENST00000581823 84 ntBASIC3.58□□□□□ -1.84
MSH5O43196 MIR4658-201ENST00000584344 65 ntBASIC3.58□□□□□ -1.84
MSH5O43196 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSH5O43196 SNORA3.2-201ENST00000408221 125 ntBASIC3.57□□□□□ -1.84
MSH5O43196 AL353803.5-201ENST00000599815 141 ntBASIC3.57□□□□□ -1.84
MSH5O43196 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.56□□□□□ -1.84
MSH5O43196 MIR20A-201ENST00000362279 71 ntBASIC3.56□□□□□ -1.84
MSH5O43196 MIR934-201ENST00000401241 83 ntBASIC3.56□□□□□ -1.84
MSH5O43196 AC108676.2-201ENST00000605225 163 ntBASIC3.56□□□□□ -1.84
MSH5O43196 SNORD114-30-201ENST00000364448 72 ntBASIC3.55□□□□□ -1.84
MSH5O43196 MIR9-1-201ENST00000385198 89 ntBASIC3.55□□□□□ -1.84
MSH5O43196 MIR1468-201ENST00000410600 86 ntBASIC3.55□□□□□ -1.84
MSH5O43196 AL591704.2-201ENST00000421658 181 ntBASIC3.55□□□□□ -1.84
MSH5O43196 SCARNA16.5-201ENST00000517114 183 ntBASIC3.55□□□□□ -1.84
MSH5O43196 RNU6-1174P-201ENST00000517278 101 ntBASIC3.55□□□□□ -1.84
MSH5O43196 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSH5O43196 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH5O43196 RNA5SP492-201ENST00000411330 114 ntBASIC3.54□□□□□ -1.84
MSH5O43196 RNU7-21P-201ENST00000459430 62 ntBASIC3.53□□□□□ -1.84
MSH5O43196 RNU6-1110P-201ENST00000516462 101 ntBASIC3.53□□□□□ -1.84
MSH5O43196 RNU6-782P-201ENST00000516852 104 ntBASIC3.53□□□□□ -1.84
MSH5O43196 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH5O43196 MIR1827-201ENST00000408549 66 ntBASIC3.52□□□□□ -1.85
MSH5O43196 RNA5SP181-201ENST00000410246 98 ntBASIC3.52□□□□□ -1.85
MSH5O43196 MIR4529-201ENST00000578110 78 ntBASIC3.52□□□□□ -1.85
MSH5O43196 Y_RNA.519-201ENST00000384553 102 ntBASIC3.51□□□□□ -1.85
MSH5O43196 RNU6-1111P-201ENST00000391118 107 ntBASIC3.51□□□□□ -1.85
MSH5O43196 RNA5SP21-201ENST00000410917 96 ntBASIC3.51□□□□□ -1.85
MSH5O43196 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC3.51□□□□□ -1.85
MSH5O43196 7SK.11-201ENST00000615477 250 ntBASIC3.51□□□□□ -1.85
MSH5O43196 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
MSH5O43196 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.5□□□□□ -1.85
MSH5O43196 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
MSH5O43196 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
MSH5O43196 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH5O43196 VTRNA1-1-201ENST00000363120 99 ntBASIC3.49□□□□□ -1.85
MSH5O43196 SNORA49-201ENST00000386157 136 ntBASIC3.49□□□□□ -1.85
MSH5O43196 SNORD2-201ENST00000459163 69 ntBASIC3.49□□□□□ -1.85
MSH5O43196 SNORA31.25-201ENST00000517242 134 ntBASIC3.49□□□□□ -1.85
MSH5O43196 MIR6073-201ENST00000352083 89 ntBASIC3.48□□□□□ -1.85
MSH5O43196 RNU4-52P-201ENST00000384209 138 ntBASIC3.48□□□□□ -1.85
MSH5O43196 RNU6-258P-201ENST00000390884 101 ntBASIC3.48□□□□□ -1.85
MSH5O43196 snoU13.23-201ENST00000458863 104 ntBASIC3.48□□□□□ -1.85
MSH5O43196 MIR8074-201ENST00000615081 81 ntBASIC3.48□□□□□ -1.85
MSH5O43196 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSH5O43196 RNA5SP289-201ENST00000362332 137 ntBASIC3.47□□□□□ -1.85
MSH5O43196 Y_RNA.676-201ENST00000516393 96 ntBASIC3.47□□□□□ -1.85
MSH5O43196 Y_RNA.698-201ENST00000516798 118 ntBASIC3.47□□□□□ -1.85
MSH5O43196 RNU1-92P-201ENST00000517017 135 ntBASIC3.47□□□□□ -1.85
MSH5O43196 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.85
MSH5O43196 SNORD89-201ENST00000390981 114 ntBASIC3.46□□□□□ -1.86
MSH5O43196 AL049779.4-201ENST00000604500 156 ntBASIC3.46□□□□□ -1.86
MSH5O43196 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.46□□□□□ -1.86
MSH5O43196 MIR512-1-201ENST00000384913 84 ntBASIC3.45□□□□□ -1.86
MSH5O43196 MIR764-201ENST00000390811 85 ntBASIC3.45□□□□□ -1.86
MSH5O43196 MIR1289-2-201ENST00000408360 111 ntBASIC3.45□□□□□ -1.86
MSH5O43196 Z96811.1-201ENST00000445880 108 ntBASIC3.45□□□□□ -1.86
MSH5O43196 HMGN2P23-201ENST00000456759 269 ntBASIC3.45□□□□□ -1.86
MSH5O43196 MIR3678-201ENST00000578455 94 ntBASIC3.45□□□□□ -1.86
MSH5O43196 MIR3937-201ENST00000580135 106 ntBASIC3.45□□□□□ -1.86
MSH5O43196 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSH5O43196 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.44□□□□□ -1.86
MSH5O43196 RNA5SP276-201ENST00000362580 94 ntBASIC3.44□□□□□ -1.86
MSH5O43196 SNORA26.9-201ENST00000391322 122 ntBASIC3.44□□□□□ -1.86
MSH5O43196 RNU4-53P-201ENST00000410828 140 ntBASIC3.44□□□□□ -1.86
MSH5O43196 RNU7-90P-201ENST00000459216 62 ntBASIC3.44□□□□□ -1.86
MSH5O43196 MIR4446-201ENST00000578505 67 ntBASIC3.44□□□□□ -1.86
MSH5O43196 RNA5SP99-201ENST00000364020 114 ntBASIC3.43□□□□□ -1.86
MSH5O43196 AC079140.2-201ENST00000506193 142 ntBASIC3.43□□□□□ -1.86
MSH5O43196 RNY1P9-201ENST00000532431 109 ntBASIC3.43□□□□□ -1.86
MSH5O43196 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
MSH5O43196 RNU6-1065P-201ENST00000384513 106 ntBASIC3.42□□□□□ -1.86
MSH5O43196 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
MSH5O43196 RNA5SP425-201ENST00000410336 112 ntBASIC3.42□□□□□ -1.86
MSH5O43196 RNA5SP320-201ENST00000516263 124 ntBASIC3.42□□□□□ -1.86
MSH5O43196 MIR302D-201ENST00000362275 68 ntBASIC3.41□□□□□ -1.86
MSH5O43196 RNU6-56P-201ENST00000516986 93 ntBASIC3.41□□□□□ -1.86
MSH5O43196 MIR4648-201ENST00000580107 72 ntBASIC3.41□□□□□ -1.86
MSH5O43196 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
MSH5O43196 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.41□□□□□ -1.86
MSH5O43196 RNU6-502P-201ENST00000362419 108 ntBASIC3.4□□□□□ -1.87
MSH5O43196 AL512310.8-201ENST00000550183 120 ntBASIC3.4□□□□□ -1.87
MSH5O43196 SNORD115.2-201ENST00000391126 59 ntBASIC3.39□□□□□ -1.87
MSH5O43196 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH5O43196 MIR3605-201ENST00000583214 100 ntBASIC3.39□□□□□ -1.87
MSH5O43196 RNU6-482P-201ENST00000391068 107 ntBASIC3.38□□□□□ -1.87
MSH5O43196 RNA5SP212-201ENST00000391223 107 ntBASIC3.38□□□□□ -1.87
MSH5O43196 RNA5SP227-201ENST00000516184 113 ntBASIC3.38□□□□□ -1.87
MSH5O43196 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.38□□□□□ -1.87
MSH5O43196 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
MSH5O43196 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSH5O43196 MIR202-201ENST00000362219 110 ntBASIC3.37□□□□□ -1.87
MSH5O43196 SNORA80D-201ENST00000384488 135 ntBASIC3.37□□□□□ -1.87
MSH5O43196 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSH5O43196 MIR26A1-201ENST00000362205 77 ntBASIC3.36□□□□□ -1.87
MSH5O43196 RNU1-124P-201ENST00000363861 145 ntBASIC3.36□□□□□ -1.87
MSH5O43196 RNA5SP210-201ENST00000391034 120 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 258.8 ms