Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 MIR148B-201ENST00000362252 99 ntBASIC3.32□□□□□ -1.88
HOXD11P31277 RNU6-716P-201ENST00000365621 103 ntBASIC3.32□□□□□ -1.88
HOXD11P31277 MIR4506-201ENST00000584693 77 ntBASIC3.32□□□□□ -1.88
HOXD11P31277 AP003355.3-201ENST00000623465 114 ntBASIC3.32□□□□□ -1.88
HOXD11P31277 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD11P31277 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC3.32□□□□□ -1.88
HOXD11P31277 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD11P31277 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD11P31277 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD11P31277 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD11P31277 RNU6-1204P-201ENST00000363948 107 ntBASIC3.31□□□□□ -1.88
HOXD11P31277 Y_RNA.363-201ENST00000365529 113 ntBASIC3.31□□□□□ -1.88
HOXD11P31277 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXD11P31277 MIR4781-201ENST00000585250 76 ntBASIC3.31□□□□□ -1.88
HOXD11P31277 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD11P31277 RNA5SP484-201ENST00000458857 111 ntBASIC3.3□□□□□ -1.88
HOXD11P31277 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.3□□□□□ -1.88
HOXD11P31277 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
HOXD11P31277 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD11P31277 MIR519A2-201ENST00000384990 87 ntBASIC3.29□□□□□ -1.88
HOXD11P31277 RNU6-1053P-201ENST00000515930 101 ntBASIC3.29□□□□□ -1.88
HOXD11P31277 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HOXD11P31277 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HOXD11P31277 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD11P31277 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HOXD11P31277 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD11P31277 RNU1-52P-201ENST00000384190 164 ntBASIC3.28□□□□□ -1.88
HOXD11P31277 SNORA3.2-201ENST00000408221 125 ntBASIC3.28□□□□□ -1.88
HOXD11P31277 MIR548E-201ENST00000408287 88 ntBASIC3.28□□□□□ -1.88
HOXD11P31277 RNU7-21P-201ENST00000459430 62 ntBASIC3.28□□□□□ -1.88
HOXD11P31277 AC002350.1-201ENST00000490759 375 ntBASIC3.28□□□□□ -1.88
HOXD11P31277 AL512310.8-201ENST00000550183 120 ntBASIC3.28□□□□□ -1.88
HOXD11P31277 MIR4287-201ENST00000579398 78 ntBASIC3.28□□□□□ -1.88
HOXD11P31277 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD11P31277 RNU6-822P-201ENST00000362707 106 ntBASIC3.27□□□□□ -1.89
HOXD11P31277 MIR934-201ENST00000401241 83 ntBASIC3.27□□□□□ -1.89
HOXD11P31277 HMGN2P38-201ENST00000423806 265 ntBASIC3.27□□□□□ -1.89
HOXD11P31277 RNU7-90P-201ENST00000459216 62 ntBASIC3.27□□□□□ -1.89
HOXD11P31277 snoU13.18-201ENST00000459483 104 ntBASIC3.27□□□□□ -1.89
HOXD11P31277 RNU6-1206P-201ENST00000516339 103 ntBASIC3.27□□□□□ -1.89
HOXD11P31277 RNA5SP402-201ENST00000517148 110 ntBASIC3.27□□□□□ -1.89
HOXD11P31277 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD11P31277 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD11P31277 MIR302D-201ENST00000362275 68 ntBASIC3.26□□□□□ -1.89
HOXD11P31277 MIR582-201ENST00000365731 98 ntBASIC3.26□□□□□ -1.89
HOXD11P31277 MIR1255B2-201ENST00000408618 67 ntBASIC3.26□□□□□ -1.89
HOXD11P31277 RNA5SP208-201ENST00000516156 78 ntBASIC3.26□□□□□ -1.89
HOXD11P31277 MIR4713-201ENST00000582691 75 ntBASIC3.26□□□□□ -1.89
HOXD11P31277 AC090617.8-201ENST00000623339 167 ntBASIC3.26□□□□□ -1.89
HOXD11P31277 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD11P31277 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD11P31277 Y_RNA.109-201ENST00000363215 102 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 U8.9-201ENST00000365667 134 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 SNORA80D-201ENST00000384488 135 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 RNU7-160P-201ENST00000516660 62 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 RN7SKP88-201ENST00000516847 250 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 7SK.8-201ENST00000612110 250 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 RMST_2.1-201ENST00000617263 136 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 7SK.13-201ENST00000622040 250 ntBASIC3.25□□□□□ -1.89
HOXD11P31277 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD11P31277 Y_RNA.540-201ENST00000384638 111 ntBASIC3.24□□□□□ -1.89
HOXD11P31277 AC098934.3-201ENST00000430450 190 ntBASIC3.24□□□□□ -1.89
HOXD11P31277 SNORA44.1-201ENST00000517031 108 ntBASIC3.24□□□□□ -1.89
HOXD11P31277 MIR4498-201ENST00000577599 66 ntBASIC3.24□□□□□ -1.89
HOXD11P31277 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HOXD11P31277 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
HOXD11P31277 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
HOXD11P31277 SNORA71.1-201ENST00000364523 117 ntBASIC3.23□□□□□ -1.89
HOXD11P31277 MIR579-201ENST00000385221 98 ntBASIC3.23□□□□□ -1.89
HOXD11P31277 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD11P31277 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD11P31277 MIR196B-201ENST00000384852 84 ntBASIC3.22□□□□□ -1.89
HOXD11P31277 MIR516B1-201ENST00000385211 90 ntBASIC3.22□□□□□ -1.89
HOXD11P31277 AC243829.6-201ENST00000612652 106 ntBASIC3.22□□□□□ -1.89
HOXD11P31277 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
HOXD11P31277 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD11P31277 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD11P31277 MIR30E-201ENST00000362104 92 ntBASIC3.21□□□□□ -1.9
HOXD11P31277 MIR499A-201ENST00000384903 122 ntBASIC3.21□□□□□ -1.9
HOXD11P31277 AC006989.1-201ENST00000427212 131 ntBASIC3.21□□□□□ -1.9
HOXD11P31277 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD11P31277 AC012493.3-201ENST00000604494 112 ntBASIC3.21□□□□□ -1.9
HOXD11P31277 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD11P31277 MAPK10-266ENST00000641066 6555 ntBASIC3.21□□□□□ -1.9
HOXD11P31277 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD11P31277 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD11P31277 SNORA7.4-201ENST00000384249 137 ntBASIC3.2□□□□□ -1.9
HOXD11P31277 MIR1827-201ENST00000408549 66 ntBASIC3.2□□□□□ -1.9
HOXD11P31277 RNU6-894P-201ENST00000517094 105 ntBASIC3.2□□□□□ -1.9
HOXD11P31277 MIR329-2-201ENST00000385029 84 ntBASIC3.19□□□□□ -1.9
HOXD11P31277 RNU6-721P-201ENST00000410155 105 ntBASIC3.19□□□□□ -1.9
HOXD11P31277 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD11P31277 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HOXD11P31277 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD11P31277 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD11P31277 RNA5SP42-201ENST00000364278 115 ntBASIC3.18□□□□□ -1.9
HOXD11P31277 RNU6-579P-201ENST00000516879 102 ntBASIC3.18□□□□□ -1.9
HOXD11P31277 RNA5SP47-201ENST00000517230 109 ntBASIC3.18□□□□□ -1.9
HOXD11P31277 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD11P31277 RN7SL499P-201ENST00000481141 276 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 189.2 ms