Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.04□□□□□ -2.08
MSX1P28360 RNA5SP247-201ENST00000411181 105 ntBASIC2.04□□□□□ -2.08
MSX1P28360 RNU6-165P-201ENST00000517170 99 ntBASIC2.04□□□□□ -2.08
MSX1P28360 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.04□□□□□ -2.08
MSX1P28360 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.04□□□□□ -2.08
MSX1P28360 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
MSX1P28360 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
MSX1P28360 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
MSX1P28360 MIR30A-201ENST00000385092 71 ntBASIC2.03□□□□□ -2.08
MSX1P28360 HMGN2P23-201ENST00000456759 269 ntBASIC2.03□□□□□ -2.08
MSX1P28360 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.03□□□□□ -2.08
MSX1P28360 RNA5SP458-201ENST00000516188 119 ntBASIC2.03□□□□□ -2.08
MSX1P28360 MIR3140-201ENST00000583685 90 ntBASIC2.03□□□□□ -2.08
MSX1P28360 Y_RNA.164-201ENST00000363709 102 ntBASIC2.02□□□□□ -2.09
MSX1P28360 RNU6-681P-201ENST00000364012 104 ntBASIC2.02□□□□□ -2.09
MSX1P28360 Y_RNA.330-201ENST00000365230 109 ntBASIC2.02□□□□□ -2.09
MSX1P28360 MIR599-201ENST00000385069 95 ntBASIC2.02□□□□□ -2.09
MSX1P28360 MIR221-201ENST00000385135 110 ntBASIC2.02□□□□□ -2.09
MSX1P28360 Y_RNA.606-201ENST00000410579 103 ntBASIC2.02□□□□□ -2.09
MSX1P28360 SNORA44.1-201ENST00000517031 108 ntBASIC2.02□□□□□ -2.09
MSX1P28360 AC036111.3-201ENST00000526389 112 ntBASIC2.02□□□□□ -2.09
MSX1P28360 MIR4771-2-201ENST00000577758 74 ntBASIC2.02□□□□□ -2.09
MSX1P28360 MIR3937-201ENST00000580135 106 ntBASIC2.02□□□□□ -2.09
MSX1P28360 MIR4771-1-201ENST00000582617 74 ntBASIC2.02□□□□□ -2.09
MSX1P28360 U6.111-201ENST00000636093 83 ntBASIC2.02□□□□□ -2.09
MSX1P28360 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
MSX1P28360 SNORD115-31-201ENST00000365318 82 ntBASIC2.01□□□□□ -2.09
MSX1P28360 RNU6-800P-201ENST00000384473 103 ntBASIC2.01□□□□□ -2.09
MSX1P28360 MIR17-201ENST00000385012 84 ntBASIC2.01□□□□□ -2.09
MSX1P28360 AL356379.1-201ENST00000414105 126 ntBASIC2.01□□□□□ -2.09
MSX1P28360 RNU7-156P-201ENST00000517214 74 ntBASIC2.01□□□□□ -2.09
MSX1P28360 MIR5089-201ENST00000580047 84 ntBASIC2.01□□□□□ -2.09
MSX1P28360 MIR4448-201ENST00000584360 86 ntBASIC2.01□□□□□ -2.09
MSX1P28360 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC2□□□□□ -2.09
MSX1P28360 RNU6-935P-201ENST00000410371 100 ntBASIC2□□□□□ -2.09
MSX1P28360 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2□□□□□ -2.09
MSX1P28360 RPL23AP42-201ENST00000471152 471 ntBASIC2□□□□□ -2.09
MSX1P28360 AC097510.1-201ENST00000510945 133 ntBASIC2□□□□□ -2.09
MSX1P28360 AL627230.6-201ENST00000611129 280 ntBASIC2□□□□□ -2.09
MSX1P28360 Y_RNA.338-201ENST00000365320 114 ntBASIC1.99□□□□□ -2.09
MSX1P28360 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
MSX1P28360 RNU6-663P-201ENST00000391105 106 ntBASIC1.99□□□□□ -2.09
MSX1P28360 RNU6-1265P-201ENST00000516342 103 ntBASIC1.99□□□□□ -2.09
MSX1P28360 AL512310.8-201ENST00000550183 120 ntBASIC1.99□□□□□ -2.09
MSX1P28360 AL645939.4-201ENST00000604495 135 ntBASIC1.99□□□□□ -2.09
MSX1P28360 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
MSX1P28360 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
MSX1P28360 SNORA24B-201ENST00000384176 131 ntBASIC1.98□□□□□ -2.09
MSX1P28360 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
MSX1P28360 RNA5SP233-201ENST00000459153 113 ntBASIC1.98□□□□□ -2.09
MSX1P28360 AC048334.1-201ENST00000477975 159 ntBASIC1.98□□□□□ -2.09
MSX1P28360 AC104435.1-201ENST00000483483 166 ntBASIC1.98□□□□□ -2.09
MSX1P28360 MIR3675-201ENST00000583661 73 ntBASIC1.98□□□□□ -2.09
MSX1P28360 Y_RNA.205-201ENST00000364128 113 ntBASIC1.97□□□□□ -2.09
MSX1P28360 SNORA64-201ENST00000384674 134 ntBASIC1.97□□□□□ -2.09
MSX1P28360 SNORA75.2-201ENST00000391138 150 ntBASIC1.97□□□□□ -2.09
MSX1P28360 SNORA75.3-201ENST00000391231 150 ntBASIC1.97□□□□□ -2.09
MSX1P28360 SNORD111-201ENST00000408139 94 ntBASIC1.97□□□□□ -2.09
MSX1P28360 RPS26P5-201ENST00000418544 335 ntBASIC1.97□□□□□ -2.09
MSX1P28360 U6.81-201ENST00000612550 106 ntBASIC1.97□□□□□ -2.09
MSX1P28360 MIR219B-201ENST00000637023 88 ntBASIC1.97□□□□□ -2.09
MSX1P28360 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
MSX1P28360 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
MSX1P28360 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
MSX1P28360 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
MSX1P28360 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
MSX1P28360 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
MSX1P28360 RNU6-535P-201ENST00000384722 107 ntBASIC1.96□□□□□ -2.1
MSX1P28360 MIR451A-201ENST00000385059 72 ntBASIC1.96□□□□□ -2.1
MSX1P28360 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.96□□□□□ -2.1
MSX1P28360 MIR4676-201ENST00000583078 72 ntBASIC1.96□□□□□ -2.1
MSX1P28360 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.96□□□□□ -2.1
MSX1P28360 AC106800.4-201ENST00000614905 153 ntBASIC1.96□□□□□ -2.1
MSX1P28360 AP000553.5-201ENST00000641933 54 ntBASIC1.96□□□□□ -2.1
MSX1P28360 RNA5SP245-201ENST00000364239 121 ntBASIC1.95□□□□□ -2.1
MSX1P28360 RNU6-1052P-201ENST00000411398 104 ntBASIC1.95□□□□□ -2.1
MSX1P28360 RNU6-719P-201ENST00000516671 104 ntBASIC1.95□□□□□ -2.1
MSX1P28360 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.95□□□□□ -2.1
MSX1P28360 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
MSX1P28360 RNU6-824P-201ENST00000363724 104 ntBASIC1.94□□□□□ -2.1
MSX1P28360 RNU6-364P-201ENST00000384387 107 ntBASIC1.94□□□□□ -2.1
MSX1P28360 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
MSX1P28360 RNU7-40P-201ENST00000516397 64 ntBASIC1.94□□□□□ -2.1
MSX1P28360 AC008608.1-201ENST00000603910 127 ntBASIC1.94□□□□□ -2.1
MSX1P28360 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
MSX1P28360 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.94□□□□□ -2.1
MSX1P28360 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.94□□□□□ -2.1
MSX1P28360 RNU6-471P-201ENST00000383944 106 ntBASIC1.93□□□□□ -2.1
MSX1P28360 MIR938-201ENST00000401216 83 ntBASIC1.93□□□□□ -2.1
MSX1P28360 RNU6-1057P-201ENST00000517162 102 ntBASIC1.93□□□□□ -2.1
MSX1P28360 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
MSX1P28360 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.93□□□□□ -2.1
MSX1P28360 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.92□□□□□ -2.1
MSX1P28360 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
MSX1P28360 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
MSX1P28360 AC244505.6-201ENST00000452829 130 ntBASIC1.92□□□□□ -2.1
MSX1P28360 MIR2113-201ENST00000459007 91 ntBASIC1.92□□□□□ -2.1
MSX1P28360 SNORA31.2-201ENST00000516019 134 ntBASIC1.92□□□□□ -2.1
MSX1P28360 RN7SKP88-201ENST00000516847 250 ntBASIC1.92□□□□□ -2.1
MSX1P28360 AC023827.1-201ENST00000569247 97 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms