Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC092628.1-201ENST00000436250 252 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 RNU6-922P-201ENST00000516753 99 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 MIR514B-201ENST00000516774 80 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 MIR1273D-201ENST00000577266 86 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.83□□□□□ -1.96
COL9A1P20849 U6.81-201ENST00000612550 106 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL9A1P20849 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL9A1P20849 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
COL9A1P20849 RNU6-1216P-201ENST00000362590 107 ntBASIC2.82□□□□□ -1.96
COL9A1P20849 RNU1-17P-201ENST00000363022 152 ntBASIC2.82□□□□□ -1.96
COL9A1P20849 SNORD45.1-201ENST00000363181 77 ntBASIC2.82□□□□□ -1.96
COL9A1P20849 SNORA24B-201ENST00000384176 131 ntBASIC2.82□□□□□ -1.96
COL9A1P20849 RNU6-56P-201ENST00000516986 93 ntBASIC2.82□□□□□ -1.96
COL9A1P20849 MTRNR2L2-201ENST00000604882 87 ntBASIC2.82□□□□□ -1.96
COL9A1P20849 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
COL9A1P20849 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.82□□□□□ -1.96
COL9A1P20849 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.82□□□□□ -1.96
COL9A1P20849 ZNF209P-201ENST00000593450 2304 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.81□□□□□ -1.96
COL9A1P20849 RNA5SP383-201ENST00000362934 120 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 SNORD114-26-201ENST00000363543 72 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 SNORA46-201ENST00000384762 135 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 RNA5SP450-201ENST00000411206 102 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.81□□□□□ -1.96
COL9A1P20849 SNRPGP19-201ENST00000603826 189 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 GHRLOS.1-201ENST00000610995 70 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 AL627230.6-201ENST00000611129 280 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 uc_338.6-201ENST00000613544 171 ntBASIC2.81□□□□□ -1.96
COL9A1P20849 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.81□□□□□ -1.96
COL9A1P20849 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL9A1P20849 RNU6-403P-201ENST00000363163 104 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 RNU6-669P-201ENST00000365575 107 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 U8.13-201ENST00000390842 128 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 RNA5SP21-201ENST00000410917 96 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 AL606490.4-201ENST00000423117 127 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 AC108667.1-201ENST00000428618 249 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 MIR5089-201ENST00000580047 84 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 MIR3140-201ENST00000583685 90 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 MIR6516-201ENST00000630554 81 ntBASIC2.8□□□□□ -1.96
COL9A1P20849 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
COL9A1P20849 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.79□□□□□ -1.96
COL9A1P20849 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL9A1P20849 SNORD115-22-201ENST00000364456 82 ntBASIC2.79□□□□□ -1.96
COL9A1P20849 RNU6-580P-201ENST00000365159 107 ntBASIC2.79□□□□□ -1.96
COL9A1P20849 JTBP1-201ENST00000441314 247 ntBASIC2.79□□□□□ -1.96
COL9A1P20849 MIR4529-201ENST00000578110 78 ntBASIC2.79□□□□□ -1.96
COL9A1P20849 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL9A1P20849 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL9A1P20849 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL9A1P20849 RNU6-935P-201ENST00000410371 100 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 AC079150.2-201ENST00000443733 78 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 AC097635.1-201ENST00000450678 155 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 AL133373.1-201ENST00000497098 94 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 RNU6-250P-201ENST00000516958 103 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 MIR4658-201ENST00000584344 65 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.78□□□□□ -1.96
COL9A1P20849 AC013244.2-201ENST00000603396 103 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.78□□□□□ -1.96
COL9A1P20849 U6.100-201ENST00000636230 99 ntBASIC2.78□□□□□ -1.96
COL9A1P20849 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
COL9A1P20849 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL9A1P20849 TRMT112P2-201ENST00000512910 132 ntBASIC2.77□□□□□ -1.97
COL9A1P20849 AP003716.2-201ENST00000528260 108 ntBASIC2.77□□□□□ -1.97
COL9A1P20849 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL9A1P20849 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.76□□□□□ -1.97
COL9A1P20849 AC110620.1-201ENST00000416042 228 ntBASIC2.76□□□□□ -1.97
COL9A1P20849 RNU6-752P-201ENST00000516376 102 ntBASIC2.76□□□□□ -1.97
COL9A1P20849 SNORA31.26-201ENST00000517250 137 ntBASIC2.76□□□□□ -1.97
COL9A1P20849 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL9A1P20849 SNORD113.1-201ENST00000363280 73 ntBASIC2.75□□□□□ -1.97
COL9A1P20849 RNU6-824P-201ENST00000363724 104 ntBASIC2.75□□□□□ -1.97
COL9A1P20849 RPS27P29-201ENST00000463110 252 ntBASIC2.75□□□□□ -1.97
COL9A1P20849 AC069503.3-201ENST00000618674 145 ntBASIC2.75□□□□□ -1.97
COL9A1P20849 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL9A1P20849 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL9A1P20849 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL9A1P20849 RNU6-805P-201ENST00000365643 106 ntBASIC2.74□□□□□ -1.97
COL9A1P20849 SNORD116-24-201ENST00000384549 92 ntBASIC2.74□□□□□ -1.97
COL9A1P20849 RNU6-765P-201ENST00000516916 99 ntBASIC2.74□□□□□ -1.97
COL9A1P20849 MIR6082-201ENST00000613604 109 ntBASIC2.74□□□□□ -1.97
COL9A1P20849 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL9A1P20849 AL596028.1-201ENST00000326971 197 ntBASIC2.73□□□□□ -1.97
COL9A1P20849 MIR378A-201ENST00000362177 66 ntBASIC2.73□□□□□ -1.97
COL9A1P20849 MIR1185-1-201ENST00000408598 86 ntBASIC2.73□□□□□ -1.97
COL9A1P20849 MIR2113-201ENST00000459007 91 ntBASIC2.73□□□□□ -1.97
COL9A1P20849 AC092185.1-201ENST00000491371 97 ntBASIC2.73□□□□□ -1.97
COL9A1P20849 RNU6-295P-201ENST00000516901 104 ntBASIC2.73□□□□□ -1.97
COL9A1P20849 SNORA31.25-201ENST00000517242 134 ntBASIC2.73□□□□□ -1.97
COL9A1P20849 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL9A1P20849 MIR103A2-201ENST00000362154 78 ntBASIC2.72□□□□□ -1.97
COL9A1P20849 RNU6-42P-201ENST00000384165 107 ntBASIC2.72□□□□□ -1.97
COL9A1P20849 snoU13.25-201ENST00000458945 104 ntBASIC2.72□□□□□ -1.97
COL9A1P20849 RN7SL75P-201ENST00000461926 281 ntBASIC2.72□□□□□ -1.97
COL9A1P20849 RNA5SP380-201ENST00000517190 98 ntBASIC2.72□□□□□ -1.97
COL9A1P20849 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.72□□□□□ -1.97
COL9A1P20849 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL9A1P20849 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
COL9A1P20849 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
COL9A1P20849 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 314 ms