Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.35□□□□□ -2.03
MSX1P28360 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
MSX1P28360 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.34□□□□□ -2.03
MSX1P28360 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
MSX1P28360 SNORA25.3-201ENST00000363205 127 ntBASIC2.34□□□□□ -2.03
MSX1P28360 MIR504-201ENST00000385065 83 ntBASIC2.34□□□□□ -2.03
MSX1P28360 MIR27B-201ENST00000385129 97 ntBASIC2.34□□□□□ -2.03
MSX1P28360 RNA5SP292-201ENST00000390974 118 ntBASIC2.34□□□□□ -2.03
MSX1P28360 RNU6-243P-201ENST00000391140 107 ntBASIC2.34□□□□□ -2.03
MSX1P28360 SNORA18.5-201ENST00000516616 101 ntBASIC2.34□□□□□ -2.03
MSX1P28360 MIR2115-201ENST00000516657 100 ntBASIC2.34□□□□□ -2.03
MSX1P28360 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.34□□□□□ -2.03
MSX1P28360 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.34□□□□□ -2.04
MSX1P28360 AL161722.3-201ENST00000605789 2983 ntBASIC2.34□□□□□ -2.04
MSX1P28360 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
MSX1P28360 MIR524-201ENST00000385242 87 ntBASIC2.33□□□□□ -2.04
MSX1P28360 MT-TF-201ENST00000387314 71 ntBASIC2.33□□□□□ -2.04
MSX1P28360 RNU6-205P-201ENST00000390858 107 ntBASIC2.33□□□□□ -2.04
MSX1P28360 SCARNA18B-201ENST00000458806 135 ntBASIC2.33□□□□□ -2.04
MSX1P28360 RNU7-62P-201ENST00000458856 62 ntBASIC2.33□□□□□ -2.04
MSX1P28360 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
MSX1P28360 Y_RNA.283-201ENST00000364798 112 ntBASIC2.32□□□□□ -2.04
MSX1P28360 RNU6-590P-201ENST00000365039 107 ntBASIC2.32□□□□□ -2.04
MSX1P28360 MIR144-201ENST00000384886 86 ntBASIC2.32□□□□□ -2.04
MSX1P28360 RNA5SP210-201ENST00000391034 120 ntBASIC2.32□□□□□ -2.04
MSX1P28360 SNORA40.18-201ENST00000391200 128 ntBASIC2.32□□□□□ -2.04
MSX1P28360 RN7SL274P-201ENST00000492268 272 ntBASIC2.32□□□□□ -2.04
MSX1P28360 RNU6-1108P-201ENST00000516308 104 ntBASIC2.32□□□□□ -2.04
MSX1P28360 RNU6-250P-201ENST00000516958 103 ntBASIC2.32□□□□□ -2.04
MSX1P28360 RNU2-19P-201ENST00000517288 84 ntBASIC2.32□□□□□ -2.04
MSX1P28360 MIR3134-201ENST00000579433 74 ntBASIC2.32□□□□□ -2.04
MSX1P28360 MIR6895-201ENST00000613497 78 ntBASIC2.32□□□□□ -2.04
MSX1P28360 U4.3-201ENST00000621047 82 ntBASIC2.32□□□□□ -2.04
MSX1P28360 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
MSX1P28360 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
MSX1P28360 ZNF658B-202ENST00000615961 3375 ntBASIC2.32□□□□□ -2.04
MSX1P28360 RNA5SP456-201ENST00000364002 114 ntBASIC2.31□□□□□ -2.04
MSX1P28360 RNU6-411P-201ENST00000384451 107 ntBASIC2.31□□□□□ -2.04
MSX1P28360 SNORA3.2-201ENST00000408221 125 ntBASIC2.31□□□□□ -2.04
MSX1P28360 AC245517.4-201ENST00000448601 281 ntBASIC2.31□□□□□ -2.04
MSX1P28360 RPL30P7-201ENST00000479312 323 ntBASIC2.31□□□□□ -2.04
MSX1P28360 RNU6-75P-201ENST00000515944 104 ntBASIC2.31□□□□□ -2.04
MSX1P28360 MIR3064-201ENST00000581130 66 ntBASIC2.31□□□□□ -2.04
MSX1P28360 SNORD92-201ENST00000585078 85 ntBASIC2.31□□□□□ -2.04
MSX1P28360 AC104996.3-201ENST00000590718 94 ntBASIC2.31□□□□□ -2.04
MSX1P28360 GHRLOS.1-201ENST00000610995 70 ntBASIC2.31□□□□□ -2.04
MSX1P28360 RNU6-132P-201ENST00000383863 107 ntBASIC2.3□□□□□ -2.04
MSX1P28360 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.3□□□□□ -2.04
MSX1P28360 MIR548U-201ENST00000390728 81 ntBASIC2.3□□□□□ -2.04
MSX1P28360 RNA5SP212-201ENST00000391223 107 ntBASIC2.3□□□□□ -2.04
MSX1P28360 RNU6-466P-201ENST00000391224 103 ntBASIC2.3□□□□□ -2.04
MSX1P28360 RNA5SP402-201ENST00000517148 110 ntBASIC2.3□□□□□ -2.04
MSX1P28360 MIR5694-201ENST00000581190 76 ntBASIC2.3□□□□□ -2.04
MSX1P28360 RNU4-58P-201ENST00000363192 141 ntBASIC2.29□□□□□ -2.04
MSX1P28360 RNU6-53P-201ENST00000365367 106 ntBASIC2.29□□□□□ -2.04
MSX1P28360 SNORA6-201ENST00000384033 151 ntBASIC2.29□□□□□ -2.04
MSX1P28360 RNU6-439P-201ENST00000384188 106 ntBASIC2.29□□□□□ -2.04
MSX1P28360 snoU13.25-201ENST00000458945 104 ntBASIC2.29□□□□□ -2.04
MSX1P28360 RNU7-106P-201ENST00000459514 67 ntBASIC2.29□□□□□ -2.04
MSX1P28360 AC055731.1-201ENST00000474387 401 ntBASIC2.29□□□□□ -2.04
MSX1P28360 uc_338.6-201ENST00000613544 171 ntBASIC2.29□□□□□ -2.04
MSX1P28360 MIR6516-201ENST00000630554 81 ntBASIC2.29□□□□□ -2.04
MSX1P28360 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
MSX1P28360 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.04
MSX1P28360 MIR377-201ENST00000362145 69 ntBASIC2.28□□□□□ -2.04
MSX1P28360 Y_RNA.491-201ENST00000384417 107 ntBASIC2.28□□□□□ -2.04
MSX1P28360 AL133373.1-201ENST00000497098 94 ntBASIC2.28□□□□□ -2.04
MSX1P28360 RNU6-531P-201ENST00000516694 104 ntBASIC2.28□□□□□ -2.04
MSX1P28360 RNU11-2P-201ENST00000516898 142 ntBASIC2.28□□□□□ -2.04
MSX1P28360 AP003716.2-201ENST00000528260 108 ntBASIC2.28□□□□□ -2.04
MSX1P28360 AC015688.6-201ENST00000577737 104 ntBASIC2.28□□□□□ -2.04
MSX1P28360 MIR4491-201ENST00000581087 68 ntBASIC2.28□□□□□ -2.04
MSX1P28360 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.27□□□□□ -2.05
MSX1P28360 MIR6073-201ENST00000352083 89 ntBASIC2.27□□□□□ -2.05
MSX1P28360 Y_RNA.264-201ENST00000364665 102 ntBASIC2.27□□□□□ -2.05
MSX1P28360 SNORD77.2-201ENST00000391045 68 ntBASIC2.27□□□□□ -2.05
MSX1P28360 RNA5SP181-201ENST00000410246 98 ntBASIC2.27□□□□□ -2.05
MSX1P28360 snoU13.15-201ENST00000459407 104 ntBASIC2.27□□□□□ -2.05
MSX1P28360 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.27□□□□□ -2.05
MSX1P28360 RNA5SP320-201ENST00000516263 124 ntBASIC2.27□□□□□ -2.05
MSX1P28360 RNU6-947P-201ENST00000516264 106 ntBASIC2.27□□□□□ -2.05
MSX1P28360 SNORA25.16-201ENST00000516741 121 ntBASIC2.27□□□□□ -2.05
MSX1P28360 RNU6-807P-201ENST00000516805 107 ntBASIC2.27□□□□□ -2.05
MSX1P28360 MIR1297-201ENST00000637311 77 ntBASIC2.27□□□□□ -2.05
MSX1P28360 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
MSX1P28360 RNA5SP276-201ENST00000362580 94 ntBASIC2.26□□□□□ -2.05
MSX1P28360 SNORD114-30-201ENST00000364448 72 ntBASIC2.26□□□□□ -2.05
MSX1P28360 DEFA7P-201ENST00000382676 285 ntBASIC2.26□□□□□ -2.05
MSX1P28360 Y_RNA.532-201ENST00000384590 113 ntBASIC2.26□□□□□ -2.05
MSX1P28360 MIR520H-201ENST00000385126 88 ntBASIC2.26□□□□□ -2.05
MSX1P28360 RNU4-53P-201ENST00000410828 140 ntBASIC2.26□□□□□ -2.05
MSX1P28360 SNORD63B-201ENST00000411005 70 ntBASIC2.26□□□□□ -2.05
MSX1P28360 RNU6-871P-201ENST00000516122 100 ntBASIC2.26□□□□□ -2.05
MSX1P28360 RNU6-539P-201ENST00000516665 103 ntBASIC2.26□□□□□ -2.05
MSX1P28360 SNORA77B-201ENST00000578179 125 ntBASIC2.26□□□□□ -2.05
MSX1P28360 RNA5SP289-201ENST00000362332 137 ntBASIC2.25□□□□□ -2.05
MSX1P28360 MIR635-201ENST00000384830 98 ntBASIC2.25□□□□□ -2.05
MSX1P28360 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
MSX1P28360 Y_RNA.588-201ENST00000391254 102 ntBASIC2.25□□□□□ -2.05
MSX1P28360 AL359511.1-201ENST00000402970 211 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 176.5 ms