Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RNA5SP137-201ENST00000516833 135 ntBASIC2.67□□□□□ -1.98
TRERF1Q96PN7 RNU6-557P-201ENST00000516842 110 ntBASIC2.67□□□□□ -1.98
TRERF1Q96PN7 RNU6-1015P-201ENST00000517121 99 ntBASIC2.67□□□□□ -1.98
TRERF1Q96PN7 AC141846.1-201ENST00000568348 142 ntBASIC2.67□□□□□ -1.98
TRERF1Q96PN7 MIR1273D-201ENST00000577266 86 ntBASIC2.67□□□□□ -1.98
TRERF1Q96PN7 MIR8066-201ENST00000617280 78 ntBASIC2.67□□□□□ -1.98
TRERF1Q96PN7 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
TRERF1Q96PN7 RNU6-686P-201ENST00000364839 107 ntBASIC2.66□□□□□ -1.98
TRERF1Q96PN7 snoU13.26-201ENST00000459452 105 ntBASIC2.66□□□□□ -1.98
TRERF1Q96PN7 MIR4709-201ENST00000577272 72 ntBASIC2.66□□□□□ -1.98
TRERF1Q96PN7 MIR4764-201ENST00000580680 88 ntBASIC2.66□□□□□ -1.98
TRERF1Q96PN7 MIR4796-201ENST00000580742 81 ntBASIC2.66□□□□□ -1.98
TRERF1Q96PN7 MIR5007-201ENST00000583098 95 ntBASIC2.66□□□□□ -1.98
TRERF1Q96PN7 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.65□□□□□ -1.99
TRERF1Q96PN7 RNU6-296P-201ENST00000384608 107 ntBASIC2.65□□□□□ -1.99
TRERF1Q96PN7 MIR520A-201ENST00000384862 85 ntBASIC2.65□□□□□ -1.99
TRERF1Q96PN7 RNA5SP292-201ENST00000390974 118 ntBASIC2.65□□□□□ -1.99
TRERF1Q96PN7 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.65□□□□□ -1.99
TRERF1Q96PN7 AC027119.1-201ENST00000440877 241 ntBASIC2.65□□□□□ -1.99
TRERF1Q96PN7 snoU13.15-201ENST00000459407 104 ntBASIC2.65□□□□□ -1.99
TRERF1Q96PN7 AC133485.1-201ENST00000567176 124 ntBASIC2.65□□□□□ -1.99
TRERF1Q96PN7 MIR4484-201ENST00000582855 83 ntBASIC2.65□□□□□ -1.99
TRERF1Q96PN7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.65□□□□□ -1.99
TRERF1Q96PN7 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
TRERF1Q96PN7 MIR21-201ENST00000362134 72 ntBASIC2.64□□□□□ -1.99
TRERF1Q96PN7 RNU6-411P-201ENST00000384451 107 ntBASIC2.64□□□□□ -1.99
TRERF1Q96PN7 RNU2-7P-201ENST00000410794 178 ntBASIC2.64□□□□□ -1.99
TRERF1Q96PN7 RNA5SP270-201ENST00000411361 118 ntBASIC2.64□□□□□ -1.99
TRERF1Q96PN7 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
TRERF1Q96PN7 SNRPGP12-201ENST00000449481 213 ntBASIC2.64□□□□□ -1.99
TRERF1Q96PN7 MIR6873-201ENST00000622788 63 ntBASIC2.64□□□□□ -1.99
TRERF1Q96PN7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
TRERF1Q96PN7 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
TRERF1Q96PN7 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.63□□□□□ -1.99
TRERF1Q96PN7 RNU6-112P-201ENST00000363599 104 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 Y_RNA.340-201ENST00000365330 92 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 MIR1265-201ENST00000408444 86 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 RPS27P21-201ENST00000486977 252 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 RNU7-43P-201ENST00000516554 64 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 RNU7-193P-201ENST00000516723 65 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 RNU6-850P-201ENST00000516934 103 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 SUB1P4-201ENST00000566062 339 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.63□□□□□ -1.99
TRERF1Q96PN7 AL512598.1-201ENST00000610158 273 ntBASIC2.63□□□□□ -1.99
TRERF1Q96PN7 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.63□□□□□ -1.99
TRERF1Q96PN7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
TRERF1Q96PN7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
TRERF1Q96PN7 RNY1P2-201ENST00000364820 117 ntBASIC2.62□□□□□ -1.99
TRERF1Q96PN7 snoU13.27-201ENST00000459278 104 ntBASIC2.62□□□□□ -1.99
TRERF1Q96PN7 AC138749.4-201ENST00000563970 127 ntBASIC2.62□□□□□ -1.99
TRERF1Q96PN7 MIR4500-201ENST00000579472 76 ntBASIC2.62□□□□□ -1.99
TRERF1Q96PN7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRERF1Q96PN7 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
TRERF1Q96PN7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
TRERF1Q96PN7 MIR424-201ENST00000362227 98 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 MIR635-201ENST00000384830 98 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 MIR520C-201ENST00000385005 87 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 AL023284.1-201ENST00000403956 276 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 RNA5SP237-201ENST00000410414 113 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 Y_RNA.648-201ENST00000459455 110 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 AC125388.1-201ENST00000459631 156 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 AC023790.1-201ENST00000482174 347 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 AP000753.3-201ENST00000604083 169 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 MIR6895-201ENST00000613497 78 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 AL662814.1-201ENST00000617364 121 ntBASIC2.61□□□□□ -1.99
TRERF1Q96PN7 AL161722.3-201ENST00000605789 2983 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
TRERF1Q96PN7 SNORA67.1-201ENST00000364749 141 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 SNORD38B-201ENST00000384690 67 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 MIR221-201ENST00000385135 110 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 SNORA48.1-201ENST00000390879 135 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 BX276092.1-201ENST00000427368 251 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 RNU6-448P-201ENST00000517052 107 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.6□□□□□ -1.99
TRERF1Q96PN7 SNORD38B-202ENST00000625943 69 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 MIR664A-201ENST00000626086 82 ntBASIC2.6□□□□□ -1.99
TRERF1Q96PN7 RNA5SP465-201ENST00000391195 109 ntBASIC2.59□□□□□ -1.99
TRERF1Q96PN7 SNORA40.18-201ENST00000391200 128 ntBASIC2.59□□□□□ -1.99
TRERF1Q96PN7 RNA5SP450-201ENST00000411206 102 ntBASIC2.59□□□□□ -1.99
TRERF1Q96PN7 RNU7-41P-201ENST00000515917 61 ntBASIC2.59□□□□□ -1.99
TRERF1Q96PN7 SNORA18.5-201ENST00000516616 101 ntBASIC2.59□□□□□ -1.99
TRERF1Q96PN7 MIR4251-201ENST00000635819 61 ntBASIC2.59□□□□□ -1.99
TRERF1Q96PN7 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
TRERF1Q96PN7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.58□□□□□ -2
TRERF1Q96PN7 RNU6-132P-201ENST00000383863 107 ntBASIC2.58□□□□□ -2
TRERF1Q96PN7 Y_RNA.386-201ENST00000383913 105 ntBASIC2.58□□□□□ -2
TRERF1Q96PN7 RNU6-949P-201ENST00000384040 107 ntBASIC2.58□□□□□ -2
TRERF1Q96PN7 RNU6-811P-201ENST00000384069 107 ntBASIC2.58□□□□□ -2
TRERF1Q96PN7 RNU6-687P-201ENST00000516443 89 ntBASIC2.58□□□□□ -2
TRERF1Q96PN7 MIR6766-201ENST00000622641 72 ntBASIC2.58□□□□□ -2
TRERF1Q96PN7 AP000553.5-201ENST00000641933 54 ntBASIC2.58□□□□□ -2
TRERF1Q96PN7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
TRERF1Q96PN7 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
TRERF1Q96PN7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
TRERF1Q96PN7 RNU1-52P-201ENST00000384190 164 ntBASIC2.57□□□□□ -2
TRERF1Q96PN7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.57□□□□□ -2
TRERF1Q96PN7 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.57□□□□□ -2
TRERF1Q96PN7 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.57□□□□□ -2
TRERF1Q96PN7 AC244023.1-201ENST00000426884 112 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms