Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RNU2-40P-201ENST00000410833 196 ntBASIC2.11□□□□□ -2.07
USP48Q86UV5 RPL30P7-201ENST00000479312 323 ntBASIC2.11□□□□□ -2.07
USP48Q86UV5 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.11□□□□□ -2.07
USP48Q86UV5 MIR4422-201ENST00000581938 83 ntBASIC2.11□□□□□ -2.07
USP48Q86UV5 RNU6-363P-201ENST00000362895 105 ntBASIC2.1□□□□□ -2.07
USP48Q86UV5 RNU6-1113P-201ENST00000384348 107 ntBASIC2.1□□□□□ -2.07
USP48Q86UV5 RNU7-113P-201ENST00000459273 62 ntBASIC2.1□□□□□ -2.07
USP48Q86UV5 MIR548AE2-201ENST00000583456 67 ntBASIC2.1□□□□□ -2.07
USP48Q86UV5 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
USP48Q86UV5 RNU6-1099P-201ENST00000363533 107 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 RNU1-78P-201ENST00000391248 165 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 RNU4-69P-201ENST00000410677 143 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 RPL39P25-201ENST00000449384 154 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 RNU6-893P-201ENST00000458841 100 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 RNU6-947P-201ENST00000516264 106 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 AC012493.3-201ENST00000604494 112 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 AL096861.1-201ENST00000610899 123 ntBASIC2.09□□□□□ -2.07
USP48Q86UV5 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USP48Q86UV5 Y_RNA.544-201ENST00000384650 113 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 MIR605-201ENST00000385078 83 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 MIR1912-201ENST00000410389 80 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 SNORA40.13-201ENST00000516379 120 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 AC141557.1-201ENST00000540982 400 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 MIR4255-201ENST00000579351 72 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 MIR3192-201ENST00000584920 77 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 MIR6504-201ENST00000613520 61 ntBASIC2.08□□□□□ -2.08
USP48Q86UV5 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
USP48Q86UV5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.08□□□□□ -2.08
USP48Q86UV5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
USP48Q86UV5 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
USP48Q86UV5 RNU6-1131P-201ENST00000364955 107 ntBASIC2.07□□□□□ -2.08
USP48Q86UV5 RNU6-616P-201ENST00000384353 107 ntBASIC2.07□□□□□ -2.08
USP48Q86UV5 MTATP8P2-201ENST00000435212 202 ntBASIC2.07□□□□□ -2.08
USP48Q86UV5 SNORA72.7-201ENST00000516349 94 ntBASIC2.07□□□□□ -2.08
USP48Q86UV5 RNA5SP33-201ENST00000516687 98 ntBASIC2.07□□□□□ -2.08
USP48Q86UV5 AC024614.2-201ENST00000577584 372 ntBASIC2.07□□□□□ -2.08
USP48Q86UV5 Y_RNA.818-201ENST00000618813 71 ntBASIC2.07□□□□□ -2.08
USP48Q86UV5 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
USP48Q86UV5 SNORA1.1-201ENST00000364671 133 ntBASIC2.06□□□□□ -2.08
USP48Q86UV5 Y_RNA.299-201ENST00000364973 94 ntBASIC2.06□□□□□ -2.08
USP48Q86UV5 MIR577-201ENST00000385196 96 ntBASIC2.06□□□□□ -2.08
USP48Q86UV5 RNU6-679P-201ENST00000391003 106 ntBASIC2.06□□□□□ -2.08
USP48Q86UV5 AC090844.1-201ENST00000422019 156 ntBASIC2.06□□□□□ -2.08
USP48Q86UV5 MIR548AO-201ENST00000579992 96 ntBASIC2.06□□□□□ -2.08
USP48Q86UV5 AL645939.4-201ENST00000604495 135 ntBASIC2.06□□□□□ -2.08
USP48Q86UV5 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.05□□□□□ -2.08
USP48Q86UV5 RNU4-67P-201ENST00000364569 141 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 Y_RNA.360-201ENST00000365512 102 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 AC009474.2-201ENST00000451383 136 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 RNU6-158P-201ENST00000517104 100 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 MIR3664-201ENST00000579074 99 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 MIR8065-201ENST00000620577 100 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 Z97988.1-201ENST00000637697 135 ntBASIC2.05□□□□□ -2.08
USP48Q86UV5 RNU6-392P-201ENST00000364926 101 ntBASIC2.04□□□□□ -2.08
USP48Q86UV5 RNU6-342P-201ENST00000384521 104 ntBASIC2.04□□□□□ -2.08
USP48Q86UV5 RNY1P7-201ENST00000384743 110 ntBASIC2.04□□□□□ -2.08
USP48Q86UV5 RPS3AP1-201ENST00000413190 320 ntBASIC2.04□□□□□ -2.08
USP48Q86UV5 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
USP48Q86UV5 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.04□□□□□ -2.08
USP48Q86UV5 DEFB131E-201ENST00000532329 154 ntBASIC2.04□□□□□ -2.08
USP48Q86UV5 AL512310.8-201ENST00000550183 120 ntBASIC2.04□□□□□ -2.08
USP48Q86UV5 CYP3A52P-201ENST00000563326 91 ntBASIC2.04□□□□□ -2.08
USP48Q86UV5 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
USP48Q86UV5 RNU1-42P-201ENST00000364033 160 ntBASIC2.03□□□□□ -2.08
USP48Q86UV5 SNORD73B-201ENST00000364394 72 ntBASIC2.03□□□□□ -2.08
USP48Q86UV5 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.03□□□□□ -2.08
USP48Q86UV5 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.03□□□□□ -2.09
USP48Q86UV5 RNY3P2-201ENST00000362918 102 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 SNORA32-201ENST00000384072 121 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 MIR7-2-201ENST00000384970 110 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.02□□□□□ -2.09
USP48Q86UV5 RNU6-733P-201ENST00000410759 104 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 RNU6-602P-201ENST00000411155 105 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 RPS27P16-201ENST00000425758 201 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 MIR4694-201ENST00000578534 80 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 MIR548Z-201ENST00000584743 97 ntBASIC2.02□□□□□ -2.09
USP48Q86UV5 Y_RNA.93-201ENST00000363066 109 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 RNU6-832P-201ENST00000363319 107 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 Y_RNA.155-201ENST00000363632 101 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 RNU6-294P-201ENST00000364999 102 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 Y_RNA.354-201ENST00000365448 111 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 RNU6-409P-201ENST00000384114 104 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 Y_RNA.507-201ENST00000384500 99 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
USP48Q86UV5 RNU6-1307P-201ENST00000391012 103 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 SNORA7.5-201ENST00000410672 110 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.01□□□□□ -2.09
USP48Q86UV5 AL133373.1-201ENST00000497098 94 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 SCARNA23-201ENST00000516060 130 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 RNU6-521P-201ENST00000516663 105 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 MIR3122-201ENST00000577243 73 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 AC012531.4-201ENST00000616509 177 ntBASIC2.01□□□□□ -2.09
USP48Q86UV5 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.01□□□□□ -2.09
USP48Q86UV5 RNA5SP363-201ENST00000365072 115 ntBASIC2□□□□□ -2.09
USP48Q86UV5 Y_RNA.342-201ENST00000365352 113 ntBASIC2□□□□□ -2.09
USP48Q86UV5 Y_RNA.601-201ENST00000410500 113 ntBASIC2□□□□□ -2.09
USP48Q86UV5 snoU13.25-201ENST00000458945 104 ntBASIC2□□□□□ -2.09
USP48Q86UV5 RNU6-902P-201ENST00000517212 91 ntBASIC2□□□□□ -2.09
USP48Q86UV5 RNU6-60P-201ENST00000364792 103 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms