Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.558-201ENST00000384685 113 ntBASIC1.9□□□□□ -2.11
RNF4P78317 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
RNF4P78317 MIR1261-201ENST00000408659 82 ntBASIC1.9□□□□□ -2.11
RNF4P78317 snoU13.2-201ENST00000459201 104 ntBASIC1.9□□□□□ -2.11
RNF4P78317 RNU6-1006P-201ENST00000516998 103 ntBASIC1.9□□□□□ -2.11
RNF4P78317 U7.3-201ENST00000616123 62 ntBASIC1.9□□□□□ -2.11
RNF4P78317 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
RNF4P78317 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
RNF4P78317 MIR1185-1-201ENST00000408598 86 ntBASIC1.89□□□□□ -2.11
RNF4P78317 SNORA44.1-201ENST00000517031 108 ntBASIC1.89□□□□□ -2.11
RNF4P78317 Y_RNA.783-201ENST00000613546 102 ntBASIC1.89□□□□□ -2.11
RNF4P78317 MIR6516-201ENST00000630554 81 ntBASIC1.89□□□□□ -2.11
RNF4P78317 SNORD114-1-201ENST00000362705 72 ntBASIC1.88□□□□□ -2.11
RNF4P78317 RNU6-654P-201ENST00000364373 107 ntBASIC1.88□□□□□ -2.11
RNF4P78317 RNA5SP138-201ENST00000365098 114 ntBASIC1.88□□□□□ -2.11
RNF4P78317 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.88□□□□□ -2.11
RNF4P78317 RNA5SP95-201ENST00000410319 137 ntBASIC1.88□□□□□ -2.11
RNF4P78317 AC096949.1-201ENST00000412047 152 ntBASIC1.88□□□□□ -2.11
RNF4P78317 BTF3P4-201ENST00000418852 495 ntBASIC1.88□□□□□ -2.11
RNF4P78317 AC109327.2-201ENST00000448339 378 ntBASIC1.88□□□□□ -2.11
RNF4P78317 RNU7-48P-201ENST00000458875 63 ntBASIC1.88□□□□□ -2.11
RNF4P78317 RN7SL274P-201ENST00000492268 272 ntBASIC1.88□□□□□ -2.11
RNF4P78317 MIR2115-201ENST00000516657 100 ntBASIC1.88□□□□□ -2.11
RNF4P78317 AP000753.3-201ENST00000604083 169 ntBASIC1.88□□□□□ -2.11
RNF4P78317 Y_RNA.140-201ENST00000363474 103 ntBASIC1.87□□□□□ -2.11
RNF4P78317 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.87□□□□□ -2.11
RNF4P78317 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.87□□□□□ -2.11
RNF4P78317 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.87□□□□□ -2.11
RNF4P78317 MIR4264-201ENST00000583520 66 ntBASIC1.87□□□□□ -2.11
RNF4P78317 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.87□□□□□ -2.11
RNF4P78317 uc_338.6-201ENST00000613544 171 ntBASIC1.87□□□□□ -2.11
RNF4P78317 SEPT14P17-201ENST00000617978 177 ntBASIC1.87□□□□□ -2.11
RNF4P78317 RNA5SP264-201ENST00000363115 107 ntBASIC1.86□□□□□ -2.11
RNF4P78317 SNORD38.1-201ENST00000363863 68 ntBASIC1.86□□□□□ -2.11
RNF4P78317 RNU6-1134P-201ENST00000365156 101 ntBASIC1.86□□□□□ -2.11
RNF4P78317 RNU6-1065P-201ENST00000384513 106 ntBASIC1.86□□□□□ -2.11
RNF4P78317 RNU7-62P-201ENST00000458856 62 ntBASIC1.86□□□□□ -2.11
RNF4P78317 snoU13.15-201ENST00000459407 104 ntBASIC1.86□□□□□ -2.11
RNF4P78317 AL133373.1-201ENST00000497098 94 ntBASIC1.86□□□□□ -2.11
RNF4P78317 RNU6-165P-201ENST00000517170 99 ntBASIC1.86□□□□□ -2.11
RNF4P78317 AP003716.2-201ENST00000528260 108 ntBASIC1.86□□□□□ -2.11
RNF4P78317 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
RNF4P78317 RNU6-949P-201ENST00000384040 107 ntBASIC1.85□□□□□ -2.11
RNF4P78317 snoU13.26-201ENST00000459452 105 ntBASIC1.85□□□□□ -2.11
RNF4P78317 AC025033.1-201ENST00000463883 194 ntBASIC1.85□□□□□ -2.11
RNF4P78317 Y_RNA.705-201ENST00000516862 110 ntBASIC1.85□□□□□ -2.11
RNF4P78317 AC026421.1-201ENST00000519101 163 ntBASIC1.85□□□□□ -2.11
RNF4P78317 AC133485.1-201ENST00000567176 124 ntBASIC1.85□□□□□ -2.11
RNF4P78317 MIR3664-201ENST00000579074 99 ntBASIC1.85□□□□□ -2.11
RNF4P78317 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.85□□□□□ -2.11
RNF4P78317 ZNF355P-201ENST00000427301 3216 ntBASIC1.85□□□□□ -2.11
RNF4P78317 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
RNF4P78317 MIR563-201ENST00000385080 79 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-1165P-201ENST00000410119 107 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-447P-201ENST00000410293 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-1118P-201ENST00000410382 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-1076P-201ENST00000410397 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-355P-201ENST00000410427 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-791P-201ENST00000410467 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-705P-201ENST00000410601 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-1100P-201ENST00000410691 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-860P-201ENST00000410860 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-1217P-201ENST00000411276 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-785P-201ENST00000411324 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 SPINT5P-201ENST00000448174 155 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RPL30P7-201ENST00000479312 323 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU1-40P-201ENST00000516816 164 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU1-97P-201ENST00000516872 164 ntBASIC1.84□□□□□ -2.11
RNF4P78317 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.84□□□□□ -2.11
RNF4P78317 MIR5089-201ENST00000580047 84 ntBASIC1.84□□□□□ -2.11
RNF4P78317 RNU6-86P-201ENST00000606534 107 ntBASIC1.84□□□□□ -2.11
RNF4P78317 U6.90-201ENST00000614007 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 U6.70-201ENST00000620287 104 ntBASIC1.84□□□□□ -2.11
RNF4P78317 AP001362.1-201ENST00000625165 124 ntBASIC1.84□□□□□ -2.11
RNF4P78317 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
RNF4P78317 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
RNF4P78317 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
RNF4P78317 Y_RNA.98-201ENST00000363109 102 ntBASIC1.83□□□□□ -2.12
RNF4P78317 RNU6-1163P-201ENST00000364516 107 ntBASIC1.83□□□□□ -2.12
RNF4P78317 RNA5SP160-201ENST00000364866 120 ntBASIC1.83□□□□□ -2.12
RNF4P78317 MIR1302-4-201ENST00000408701 150 ntBASIC1.83□□□□□ -2.12
RNF4P78317 AL445685.2-201ENST00000422551 342 ntBASIC1.83□□□□□ -2.12
RNF4P78317 RNU6-717P-201ENST00000459076 104 ntBASIC1.83□□□□□ -2.12
RNF4P78317 AL512310.8-201ENST00000550183 120 ntBASIC1.83□□□□□ -2.12
RNF4P78317 SNORA4-201ENST00000584302 138 ntBASIC1.83□□□□□ -2.12
RNF4P78317 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
RNF4P78317 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.82□□□□□ -2.12
RNF4P78317 MIR30D-201ENST00000362283 70 ntBASIC1.82□□□□□ -2.12
RNF4P78317 SNORD33-201ENST00000362761 85 ntBASIC1.82□□□□□ -2.12
RNF4P78317 RNU6-813P-201ENST00000384691 107 ntBASIC1.82□□□□□ -2.12
RNF4P78317 MT-TN-201ENST00000387400 73 ntBASIC1.82□□□□□ -2.12
RNF4P78317 SNORA26.2-201ENST00000390922 122 ntBASIC1.82□□□□□ -2.12
RNF4P78317 MIR548G-201ENST00000408442 89 ntBASIC1.82□□□□□ -2.12
RNF4P78317 RNA5SP338-201ENST00000410495 85 ntBASIC1.82□□□□□ -2.12
RNF4P78317 RNU6-887P-201ENST00000410660 100 ntBASIC1.82□□□□□ -2.12
RNF4P78317 RNY4P29-201ENST00000410801 97 ntBASIC1.82□□□□□ -2.12
RNF4P78317 RPS27P16-201ENST00000425758 201 ntBASIC1.82□□□□□ -2.12
RNF4P78317 AC245517.4-201ENST00000448601 281 ntBASIC1.82□□□□□ -2.12
RNF4P78317 MIR3198-2-201ENST00000577868 80 ntBASIC1.82□□□□□ -2.12
RNF4P78317 AC062037.1-201ENST00000605302 128 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 216.8 ms