Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 AL121832.2-201ENST00000610979 668 ntBASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.22■□□□□ 0.19
CHMP1AQ9HD42 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 AC092437.1-201ENST00000624794 1048 ntBASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 AC006333.2-201ENST00000607957 2099 ntBASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CHMP1AQ9HD42 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CHMP1AQ9HD42 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CHMP1AQ9HD42 AC092368.3-202ENST00000574180 1591 ntBASIC16.21■□□□□ 0.18
CHMP1AQ9HD42 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CHMP1AQ9HD42 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CHMP1AQ9HD42 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 NOC2LP2-201ENST00000407594 1944 ntBASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 YBX1P10-201ENST00000444752 975 ntBASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CHMP1AQ9HD42 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms