Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AP002414.1-201ENST00000391405 1147 ntBASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 MCCD1P1-208ENST00000445732 328 ntBASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AL390955.2-201ENST00000603032 514 ntBASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AC010240.3-201ENST00000607688 395 ntBASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 AP005117.1-201ENST00000584346 1413 ntBASIC19.08■□□□□ 0.64
COL25A1Q9BXS0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 AP005018.1-201ENST00000525475 301 ntBASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 TP73-AS1-210ENST00000637775 1455 ntBASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 DPP3P2-201ENST00000416030 1696 ntBASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL25A1Q9BXS0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 INGX-202ENST00000489074 768 ntBASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 SNX12-206ENST00000622259 661 ntTSL 5 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 AL356309.3-201ENST00000624132 1934 ntBASIC19.06■□□□□ 0.64
COL25A1Q9BXS0 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 AC005229.4-201ENST00000610085 2198 ntBASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 RN7SL204P-201ENST00000582831 262 ntBASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 AC107918.4-202ENST00000641623 219 ntBASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL25A1Q9BXS0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms