Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AC073314.1-201ENST00000568729 2216 ntBASIC18.47■□□□□ 0.55
CFAP54Q96N23 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CFAP54Q96N23 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.47■□□□□ 0.55
CFAP54Q96N23 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CFAP54Q96N23 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CFAP54Q96N23 MIR770-201ENST00000390219 98 ntBASIC18.47■□□□□ 0.55
CFAP54Q96N23 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CFAP54Q96N23 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CFAP54Q96N23 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CFAP54Q96N23 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 TMEM179-206ENST00000616017 1645 ntBASIC18.47■□□□□ 0.55
CFAP54Q96N23 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CFAP54Q96N23 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.47■□□□□ 0.55
CFAP54Q96N23 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 HLA-V-201ENST00000429037 534 ntBASIC18.46■□□□□ 0.55
CFAP54Q96N23 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 AL035252.4-201ENST00000624174 288 ntBASIC18.46■□□□□ 0.55
CFAP54Q96N23 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CFAP54Q96N23 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.46■□□□□ 0.55
CFAP54Q96N23 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CFAP54Q96N23 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CFAP54Q96N23 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.46■□□□□ 0.54
CFAP54Q96N23 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.54
CFAP54Q96N23 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.46■□□□□ 0.54
CFAP54Q96N23 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.46■□□□□ 0.54
CFAP54Q96N23 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CFAP54Q96N23 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CFAP54Q96N23 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 AC091607.1-201ENST00000490318 1060 ntBASIC18.45■□□□□ 0.54
CFAP54Q96N23 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.45■□□□□ 0.54
CFAP54Q96N23 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CFAP54Q96N23 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CFAP54Q96N23 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 KRT18P3-201ENST00000451602 1288 ntBASIC18.44■□□□□ 0.54
CFAP54Q96N23 AC090616.6-201ENST00000582640 721 ntBASIC18.44■□□□□ 0.54
CFAP54Q96N23 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CFAP54Q96N23 KRT8P11-201ENST00000409686 1436 ntBASIC18.44■□□□□ 0.54
CFAP54Q96N23 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CFAP54Q96N23 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms