Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDDC3Q8N4P3 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 MIR3180-5-201ENST00000583743 153 ntBASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDDC3Q8N4P3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 AL158211.5-201ENST00000623583 2518 ntBASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 SPDYE15P-201ENST00000424157 909 ntBASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 AC024243.1-201ENST00000609234 778 ntBASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
HDDC3Q8N4P3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
HDDC3Q8N4P3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HDDC3Q8N4P3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms