Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.7■□□□□ 0.74
HDAC4P56524 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.7■□□□□ 0.74
HDAC4P56524 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 UNC93B2-201ENST00000285383 730 ntBASIC19.7■□□□□ 0.74
HDAC4P56524 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.7■□□□□ 0.74
HDAC4P56524 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.7■□□□□ 0.74
HDAC4P56524 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.7■□□□□ 0.74
HDAC4P56524 CRYGFP-201ENST00000418459 633 ntBASIC19.7■□□□□ 0.74
HDAC4P56524 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.7■□□□□ 0.74
HDAC4P56524 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.7■□□□□ 0.74
HDAC4P56524 AP005242.2-201ENST00000580065 1175 ntBASIC19.7■□□□□ 0.74
HDAC4P56524 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
HDAC4P56524 AC083906.6-201ENST00000641366 219 ntBASIC19.7■□□□□ 0.74
HDAC4P56524 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HDAC4P56524 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.7■□□□□ 0.74
HDAC4P56524 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HDAC4P56524 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDAC4P56524 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
HDAC4P56524 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HDAC4P56524 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.69■□□□□ 0.74
HDAC4P56524 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HDAC4P56524 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.69■□□□□ 0.74
HDAC4P56524 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.69■□□□□ 0.74
HDAC4P56524 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.69■□□□□ 0.74
HDAC4P56524 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.69■□□□□ 0.74
HDAC4P56524 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDAC4P56524 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.68■□□□□ 0.74
HDAC4P56524 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.68■□□□□ 0.74
HDAC4P56524 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
HDAC4P56524 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 AL390955.1-201ENST00000428694 934 ntBASIC19.68■□□□□ 0.74
HDAC4P56524 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.68■□□□□ 0.74
HDAC4P56524 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.68■□□□□ 0.74
HDAC4P56524 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.68■□□□□ 0.74
HDAC4P56524 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.68■□□□□ 0.74
HDAC4P56524 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HDAC4P56524 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HDAC4P56524 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.67■□□□□ 0.74
HDAC4P56524 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 AC093525.10-201ENST00000625130 1569 ntBASIC19.67■□□□□ 0.74
HDAC4P56524 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 AL512353.2-201ENST00000448759 1962 ntBASIC19.67■□□□□ 0.74
HDAC4P56524 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
HDAC4P56524 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDAC4P56524 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.67■□□□□ 0.74
HDAC4P56524 FITM1-202ENST00000559294 800 ntBASIC19.67■□□□□ 0.74
HDAC4P56524 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.67■□□□□ 0.74
HDAC4P56524 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms