Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL354751.1-201ENST00000412768 1863 ntBASIC18.5■□□□□ 0.55
PKNOX1P55347 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.5■□□□□ 0.55
PKNOX1P55347 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PKNOX1P55347 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.5■□□□□ 0.55
PKNOX1P55347 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.5■□□□□ 0.55
PKNOX1P55347 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.5■□□□□ 0.55
PKNOX1P55347 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.5■□□□□ 0.55
PKNOX1P55347 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.5■□□□□ 0.55
PKNOX1P55347 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.5■□□□□ 0.55
PKNOX1P55347 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.5■□□□□ 0.55
PKNOX1P55347 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
PKNOX1P55347 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.5■□□□□ 0.55
PKNOX1P55347 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.5■□□□□ 0.55
PKNOX1P55347 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
PKNOX1P55347 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.49■□□□□ 0.55
PKNOX1P55347 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.49■□□□□ 0.55
PKNOX1P55347 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.49■□□□□ 0.55
PKNOX1P55347 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 AL355802.2-201ENST00000402069 882 ntBASIC18.49■□□□□ 0.55
PKNOX1P55347 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
PKNOX1P55347 AP003097.1-201ENST00000530657 1135 ntBASIC18.49■□□□□ 0.55
PKNOX1P55347 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PKNOX1P55347 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.49■□□□□ 0.55
PKNOX1P55347 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.49■□□□□ 0.55
PKNOX1P55347 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PKNOX1P55347 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PKNOX1P55347 NOC2LP1-202ENST00000452600 2235 ntBASIC18.49■□□□□ 0.55
PKNOX1P55347 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PKNOX1P55347 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PKNOX1P55347 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.49■□□□□ 0.55
PKNOX1P55347 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.49■□□□□ 0.55
PKNOX1P55347 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PKNOX1P55347 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.48■□□□□ 0.55
PKNOX1P55347 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PKNOX1P55347 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.48■□□□□ 0.55
PKNOX1P55347 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PKNOX1P55347 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 KRT17P3-201ENST00000420566 1262 ntBASIC18.48■□□□□ 0.55
PKNOX1P55347 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.48■□□□□ 0.55
PKNOX1P55347 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.48■□□□□ 0.55
PKNOX1P55347 MTDHP1-201ENST00000605323 784 ntBASIC18.48■□□□□ 0.55
PKNOX1P55347 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.48■□□□□ 0.55
PKNOX1P55347 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.48■□□□□ 0.55
PKNOX1P55347 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.48■□□□□ 0.55
PKNOX1P55347 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.48■□□□□ 0.55
PKNOX1P55347 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.48■□□□□ 0.55
PKNOX1P55347 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PKNOX1P55347 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.47■□□□□ 0.55
PKNOX1P55347 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PKNOX1P55347 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
PKNOX1P55347 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PKNOX1P55347 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms