Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
FREM3P0C091 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.12■□□□□ 0.33
FREM3P0C091 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.12■□□□□ 0.33
FREM3P0C091 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
FREM3P0C091 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
FREM3P0C091 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
FREM3P0C091 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.12■□□□□ 0.33
FREM3P0C091 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
FREM3P0C091 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FREM3P0C091 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.12■□□□□ 0.33
FREM3P0C091 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.11■□□□□ 0.33
FREM3P0C091 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.11■□□□□ 0.33
FREM3P0C091 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.11■□□□□ 0.33
FREM3P0C091 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.11■□□□□ 0.33
FREM3P0C091 AC010203.1-204ENST00000548782 407 ntBASIC17.11■□□□□ 0.33
FREM3P0C091 AC141257.4-201ENST00000634557 245 ntBASIC17.11■□□□□ 0.33
FREM3P0C091 AC136944.6-201ENST00000634818 245 ntBASIC17.11■□□□□ 0.33
FREM3P0C091 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.11■□□□□ 0.33
FREM3P0C091 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
FREM3P0C091 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
FREM3P0C091 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.11■□□□□ 0.33
FREM3P0C091 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
FREM3P0C091 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.11■□□□□ 0.33
FREM3P0C091 AC006011.2-201ENST00000621313 1158 ntBASIC17.11■□□□□ 0.33
FREM3P0C091 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FREM3P0C091 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.1■□□□□ 0.33
FREM3P0C091 AC092338.2-201ENST00000568827 1415 ntBASIC17.1■□□□□ 0.33
FREM3P0C091 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
FREM3P0C091 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 AL161938.1-201ENST00000569833 2180 ntBASIC17.1■□□□□ 0.33
FREM3P0C091 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.1■□□□□ 0.33
FREM3P0C091 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.1■□□□□ 0.33
FREM3P0C091 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 GPAT2P1-201ENST00000444924 1672 ntBASIC17.1■□□□□ 0.33
FREM3P0C091 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
FREM3P0C091 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.1■□□□□ 0.33
FREM3P0C091 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.1■□□□□ 0.33
FREM3P0C091 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
FREM3P0C091 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
FREM3P0C091 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.09■□□□□ 0.33
FREM3P0C091 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 AL137013.1-201ENST00000432946 1228 ntBASIC17.09■□□□□ 0.33
FREM3P0C091 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 AC005363.2-201ENST00000618631 242 ntBASIC17.09■□□□□ 0.33
FREM3P0C091 MYC-208ENST00000641036 567 ntBASIC17.09■□□□□ 0.33
FREM3P0C091 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.09■□□□□ 0.33
FREM3P0C091 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.09■□□□□ 0.33
FREM3P0C091 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
FREM3P0C091 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
FREM3P0C091 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.09■□□□□ 0.33
FREM3P0C091 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FREM3P0C091 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms