Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
HMGB1P09429 NFYC-AS1-201ENST00000606277 1687 ntBASIC22.26■■□□□ 1.15
HMGB1P09429 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 MTMR9LP-203ENST00000426597 1545 ntBASIC22.26■■□□□ 1.15
HMGB1P09429 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.25■■□□□ 1.15
HMGB1P09429 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC22.25■■□□□ 1.15
HMGB1P09429 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
HMGB1P09429 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 UNC93B2-201ENST00000285383 730 ntBASIC22.25■■□□□ 1.15
HMGB1P09429 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC22.25■■□□□ 1.15
HMGB1P09429 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
HMGB1P09429 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC22.25■■□□□ 1.15
HMGB1P09429 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 SNAI3-AS1-205ENST00000568633 2096 ntBASIC22.25■■□□□ 1.15
HMGB1P09429 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
HMGB1P09429 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC22.25■■□□□ 1.15
HMGB1P09429 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
HMGB1P09429 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGB1P09429 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGB1P09429 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
HMGB1P09429 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.24■■□□□ 1.15
HMGB1P09429 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGB1P09429 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGB1P09429 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.24■■□□□ 1.15
HMGB1P09429 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
HMGB1P09429 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
HMGB1P09429 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGB1P09429 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGB1P09429 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.23■■□□□ 1.15
HMGB1P09429 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 CRYGFP-201ENST00000418459 633 ntBASIC22.23■■□□□ 1.15
HMGB1P09429 TSPY7P-201ENST00000431358 1114 ntBASIC22.23■■□□□ 1.15
HMGB1P09429 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 KRT17P2-201ENST00000300992 1314 ntBASIC22.23■■□□□ 1.15
HMGB1P09429 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGB1P09429 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
HMGB1P09429 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.23■■□□□ 1.15
HMGB1P09429 AL109659.2-201ENST00000606809 1674 ntBASIC22.23■■□□□ 1.15
HMGB1P09429 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
HMGB1P09429 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC22.22■■□□□ 1.15
HMGB1P09429 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.22■■□□□ 1.15
HMGB1P09429 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 RCC2P3-201ENST00000418112 1537 ntBASIC22.22■■□□□ 1.15
HMGB1P09429 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.22■■□□□ 1.15
HMGB1P09429 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 FDX2-206ENST00000492239 773 ntTSL 2 BASIC22.22■■□□□ 1.15
HMGB1P09429 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
HMGB1P09429 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGB1P09429 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGB1P09429 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
HMGB1P09429 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGB1P09429 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGB1P09429 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms