Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MIR5194-201ENST00000582634 120 ntBASIC2.46□□□□□ -2.02
AP4E1Q9UPM8 AL137847.3-201ENST00000611521 109 ntBASIC2.46□□□□□ -2.02
AP4E1Q9UPM8 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
AP4E1Q9UPM8 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
AP4E1Q9UPM8 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
AP4E1Q9UPM8 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
AP4E1Q9UPM8 RNU6-1313P-201ENST00000362622 102 ntBASIC2.45□□□□□ -2.02
AP4E1Q9UPM8 RNU6-162P-201ENST00000516228 103 ntBASIC2.45□□□□□ -2.02
AP4E1Q9UPM8 RNU6-638P-201ENST00000516582 104 ntBASIC2.45□□□□□ -2.02
AP4E1Q9UPM8 RNU6-521P-201ENST00000516663 105 ntBASIC2.45□□□□□ -2.02
AP4E1Q9UPM8 SNORD45B-201ENST00000364617 72 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 SNORA32-201ENST00000384072 121 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 RNU1-52P-201ENST00000384190 164 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 SNORA18-201ENST00000384416 132 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 Y_RNA.537-201ENST00000384626 109 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 BTF3P4-201ENST00000418852 495 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 MRPL35P3-201ENST00000421557 364 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 HMGN1P33-201ENST00000432945 451 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 RNA5SP24-201ENST00000516478 95 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 RNA5SP481-201ENST00000516814 122 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 AC022254.1-201ENST00000567857 235 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 MIR4672-201ENST00000583126 81 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 AC046143.2-201ENST00000609789 160 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 SNORD3E-202ENST00000627253 216 ntBASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
AP4E1Q9UPM8 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.43□□□□□ -2.02
AP4E1Q9UPM8 Y_RNA.95-201ENST00000363079 95 ntBASIC2.43□□□□□ -2.02
AP4E1Q9UPM8 Y_RNA.219-201ENST00000364232 113 ntBASIC2.43□□□□□ -2.02
AP4E1Q9UPM8 SNORA67.1-201ENST00000364749 141 ntBASIC2.43□□□□□ -2.02
AP4E1Q9UPM8 RNA5SP402-201ENST00000517148 110 ntBASIC2.43□□□□□ -2.02
AP4E1Q9UPM8 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.43□□□□□ -2.02
AP4E1Q9UPM8 MIR424-201ENST00000362227 98 ntBASIC2.42□□□□□ -2.02
AP4E1Q9UPM8 AL451046.2-201ENST00000403074 277 ntBASIC2.42□□□□□ -2.02
AP4E1Q9UPM8 AL513328.1-201ENST00000446460 224 ntBASIC2.42□□□□□ -2.02
AP4E1Q9UPM8 RNA5SP82-201ENST00000516707 92 ntBASIC2.42□□□□□ -2.02
AP4E1Q9UPM8 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
AP4E1Q9UPM8 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 SNORA1.1-201ENST00000364671 133 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 Y_RNA.467-201ENST00000384297 102 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 RNA5SP100-201ENST00000410903 110 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 RNA5SP59-201ENST00000410922 110 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 RPL23AP6-201ENST00000446637 472 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 Y_RNA.659-201ENST00000515994 113 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 Y_RNA.685-201ENST00000516532 108 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 SNORA74.3-201ENST00000517108 154 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 SNORD14A-201ENST00000606526 91 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.41□□□□□ -2.02
AP4E1Q9UPM8 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
AP4E1Q9UPM8 Y_RNA.96-201ENST00000363092 109 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 RNU6-457P-201ENST00000363999 107 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 RNU6-675P-201ENST00000384236 104 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 RNU6-342P-201ENST00000384521 104 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 SNORD78.1-201ENST00000390866 65 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 AC011753.1-201ENST00000451001 220 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 snoU13.16-201ENST00000459350 104 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 SNORA31.11-201ENST00000516528 139 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 Y_RNA.705-201ENST00000516862 110 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 MIR5007-201ENST00000583098 95 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 FAM106DP-201ENST00000586416 501 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 MIR8055-201ENST00000610739 97 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 MIR8065-201ENST00000620577 100 ntBASIC2.4□□□□□ -2.03
AP4E1Q9UPM8 RNA5SP289-201ENST00000362332 137 ntBASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 SNORD115-35-201ENST00000365122 82 ntBASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 SNORA67.4-201ENST00000384688 142 ntBASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 RNU6-1307P-201ENST00000391012 103 ntBASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 AC108729.3-201ENST00000513484 108 ntBASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 RNU6-1006P-201ENST00000516998 103 ntBASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 MIR6766-201ENST00000622641 72 ntBASIC2.39□□□□□ -2.03
AP4E1Q9UPM8 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 RNU6-301P-201ENST00000384277 107 ntBASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 RNU6-887P-201ENST00000410660 100 ntBASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 RNU2-40P-201ENST00000410833 196 ntBASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 AC022137.1-201ENST00000483735 151 ntBASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 RNU6-917P-201ENST00000516294 104 ntBASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 Z97988.1-201ENST00000637697 135 ntBASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 AL512310.12-203ENST00000640543 90 ntBASIC2.38□□□□□ -2.03
AP4E1Q9UPM8 Y_RNA.247-201ENST00000364500 92 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 MIR206-201ENST00000384872 86 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 MIR144-201ENST00000384886 86 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 RNA5SP450-201ENST00000411206 102 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 AC090844.1-201ENST00000422019 156 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 UBL5P1-201ENST00000507979 193 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 RNU7-2P-201ENST00000516096 62 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 RNU7-43P-201ENST00000516554 64 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 RNU7-35P-201ENST00000517174 62 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 MIR376B-201ENST00000614515 100 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 AC245884.12-201ENST00000615364 59 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 AC008133.2-201ENST00000624540 351 ntBASIC2.37□□□□□ -2.03
AP4E1Q9UPM8 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 Y_RNA.73-201ENST00000362910 113 ntBASIC2.36□□□□□ -2.03
AP4E1Q9UPM8 Y_RNA.190-201ENST00000363964 101 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 180 ms