Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.13□□□□□ -2.23
COL4A4P53420 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.13□□□□□ -2.23
COL4A4P53420 AC006441.5-201ENST00000612680 209 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 MIR8087-201ENST00000612745 78 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.13□□□□□ -2.23
COL4A4P53420 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
COL4A4P53420 RNU6-486P-201ENST00000363116 107 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 RNA5SP125-201ENST00000364843 120 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 RNU6-1083P-201ENST00000384022 107 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 MIR570-201ENST00000384917 97 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 MIR150-201ENST00000385048 84 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 RNU7-26P-201ENST00000458980 63 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.12□□□□□ -2.23
COL4A4P53420 RNU6-537P-201ENST00000517277 103 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 AL358944.1-201ENST00000528537 144 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 MIR4658-201ENST00000584344 65 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
COL4A4P53420 AC080100.1-201ENST00000624239 5356 ntBASIC1.12□□□□□ -2.23
COL4A4P53420 RNU6-888P-201ENST00000363010 101 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 SNORD114-23-201ENST00000363536 72 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 U8.6-201ENST00000364939 135 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 Y_RNA.351-201ENST00000365436 96 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 Y_RNA.366-201ENST00000365540 102 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 RNU6-32P-201ENST00000383948 107 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 RNU6-442P-201ENST00000383968 104 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 RNU6-13P-201ENST00000384248 107 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 RNU6-12P-201ENST00000384604 107 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 RNU6-41P-201ENST00000384741 107 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 MIR759-201ENST00000390224 91 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 SNORD72-201ENST00000390994 80 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 SNORD23.1-201ENST00000408212 104 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.11□□□□□ -2.23
COL4A4P53420 SNORA40.13-201ENST00000516379 120 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.11□□□□□ -2.23
COL4A4P53420 AL355297.2-201ENST00000604792 129 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 U6.108-201ENST00000637764 58 ntBASIC1.11□□□□□ -2.23
COL4A4P53420 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
COL4A4P53420 RNU6-862P-201ENST00000362804 105 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 snoU2-30.2-201ENST00000362805 70 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-743P-201ENST00000364151 106 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 SNORD73B-201ENST00000364394 72 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 Y_RNA.388-201ENST00000383919 113 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-1113P-201ENST00000384348 107 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-1274P-201ENST00000384557 107 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 Y_RNA.549-201ENST00000384657 102 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 SNORD77.3-201ENST00000391113 65 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 AL353689.1-201ENST00000438895 199 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RPL39P34-201ENST00000477141 156 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RPS23P4-201ENST00000487908 423 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 MRPS17P9-201ENST00000511924 393 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 MIR4762-201ENST00000585261 75 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 MIR4295-201ENST00000585286 85 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 AC008507.4-201ENST00000585464 127 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 MIR340-201ENST00000362125 95 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 Y_RNA.198-201ENST00000364013 98 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 MT-TI-201ENST00000387365 69 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 MIR548O-201ENST00000408583 114 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 NDUFA4P2-201ENST00000489989 244 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-240P-201ENST00000516098 97 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-1291P-201ENST00000516591 104 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-856P-201ENST00000516959 98 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-1096P-201ENST00000517089 102 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 RNU6-1270P-201ENST00000517128 108 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 AC211469.2-201ENST00000605461 205 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 AC103810.9-201ENST00000606688 112 ntBASIC1.1□□□□□ -2.23
COL4A4P53420 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.1□□□□□ -2.23
COL4A4P53420 RNU1-72P-201ENST00000362976 153 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 SNORD115-28-201ENST00000363931 81 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 SNORA2.2-201ENST00000365473 135 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 MIR522-201ENST00000385071 87 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 RNU1-78P-201ENST00000391248 165 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 RPS3AP1-201ENST00000413190 320 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 EDDM3CP-201ENST00000415977 425 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 HMGN2P32-201ENST00000444648 269 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 AC233266.1-201ENST00000454518 96 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 RNU1-131P-201ENST00000458943 161 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 Y_RNA.649-201ENST00000459077 103 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 AC004812.1-201ENST00000540773 146 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.09□□□□□ -2.24
COL4A4P53420 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.09□□□□□ -2.24
COL4A4P53420 RNU6-94P-201ENST00000607728 107 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 AL353149.1-201ENST00000610667 244 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 AC242852.1-201ENST00000612151 96 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.09□□□□□ -2.24
COL4A4P53420 AL121890.5-201ENST00000620848 304 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 AC244015.1-201ENST00000622301 99 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 MIR2052-201ENST00000636055 55 ntBASIC1.09□□□□□ -2.24
COL4A4P53420 SNORA1B-201ENST00000362535 133 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 Y_RNA.37-201ENST00000362606 108 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 Y_RNA.267-201ENST00000364679 109 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 Y_RNA.328-201ENST00000365208 113 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 RNU6-1014P-201ENST00000383940 103 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 SNORA51.10-201ENST00000384418 136 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 MIR17-201ENST00000385012 84 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 MIR450A2-201ENST00000385022 100 ntBASIC1.08□□□□□ -2.24
COL4A4P53420 RNU6-554P-201ENST00000410466 106 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms