Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SNORD88.1-201ENST00000408684 91 ntBASIC2.81□□□□□ -1.96
USP3Q9Y6I4 RNU6-592P-201ENST00000411333 103 ntBASIC2.81□□□□□ -1.96
USP3Q9Y6I4 MIR548AR-201ENST00000582191 57 ntBASIC2.81□□□□□ -1.96
USP3Q9Y6I4 MIR4777-201ENST00000583710 86 ntBASIC2.81□□□□□ -1.96
USP3Q9Y6I4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.81□□□□□ -1.96
USP3Q9Y6I4 AL512310.12-203ENST00000640543 90 ntBASIC2.81□□□□□ -1.96
USP3Q9Y6I4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.81□□□□□ -1.96
USP3Q9Y6I4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
USP3Q9Y6I4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
USP3Q9Y6I4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.8□□□□□ -1.96
USP3Q9Y6I4 MIR424-201ENST00000362227 98 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 RNU6-859P-201ENST00000362728 107 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 RNU6-112P-201ENST00000363599 104 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 RNU6-242P-201ENST00000384359 107 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 RNVU1-2-201ENST00000516326 135 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 RNA5SP282-201ENST00000516355 108 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 MIR4672-201ENST00000583126 81 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 RPL12P50-201ENST00000603116 116 ntBASIC2.8□□□□□ -1.96
USP3Q9Y6I4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP3Q9Y6I4 RNU6-675P-201ENST00000384236 104 ntBASIC2.79□□□□□ -1.96
USP3Q9Y6I4 SNORD116-22-201ENST00000384430 92 ntBASIC2.79□□□□□ -1.96
USP3Q9Y6I4 HMGN2P39-201ENST00000398005 273 ntBASIC2.79□□□□□ -1.96
USP3Q9Y6I4 UBBP3-201ENST00000445497 241 ntBASIC2.79□□□□□ -1.96
USP3Q9Y6I4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP3Q9Y6I4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.79□□□□□ -1.96
USP3Q9Y6I4 AC108729.3-201ENST00000513484 108 ntBASIC2.79□□□□□ -1.96
USP3Q9Y6I4 RNU6-56P-201ENST00000516986 93 ntBASIC2.79□□□□□ -1.96
USP3Q9Y6I4 AC022254.1-201ENST00000567857 235 ntBASIC2.79□□□□□ -1.96
USP3Q9Y6I4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.79□□□□□ -1.96
USP3Q9Y6I4 SNORD56.5-201ENST00000364281 72 ntBASIC2.78□□□□□ -1.96
USP3Q9Y6I4 RNU6-296P-201ENST00000384608 107 ntBASIC2.78□□□□□ -1.96
USP3Q9Y6I4 RNU2-40P-201ENST00000410833 196 ntBASIC2.78□□□□□ -1.96
USP3Q9Y6I4 AC093850.1-201ENST00000454121 251 ntBASIC2.78□□□□□ -1.96
USP3Q9Y6I4 RNU7-43P-201ENST00000516554 64 ntBASIC2.78□□□□□ -1.96
USP3Q9Y6I4 RNA5SP437-201ENST00000517249 129 ntBASIC2.78□□□□□ -1.96
USP3Q9Y6I4 MIR6852-201ENST00000621699 66 ntBASIC2.78□□□□□ -1.96
USP3Q9Y6I4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
USP3Q9Y6I4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
USP3Q9Y6I4 SNORD116-10-201ENST00000363791 102 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 SNORD115-35-201ENST00000365122 82 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 RNU6-913P-201ENST00000390913 95 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 RPL23AP6-201ENST00000446637 472 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 MIR1270-201ENST00000459320 83 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 SNORA74.3-201ENST00000517108 154 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 MIR6733-201ENST00000635723 61 ntBASIC2.77□□□□□ -1.97
USP3Q9Y6I4 MIR526A1-201ENST00000384897 85 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 SNORD28B-201ENST00000390993 75 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 RNA5SP344-201ENST00000411081 104 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 AC022137.1-201ENST00000483735 151 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 RNU7-2P-201ENST00000516096 62 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 RNU6-162P-201ENST00000516228 103 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.76□□□□□ -1.97
USP3Q9Y6I4 MIR4635-201ENST00000583759 79 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 AC025521.1-201ENST00000621624 286 ntBASIC2.76□□□□□ -1.97
USP3Q9Y6I4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.76□□□□□ -1.97
USP3Q9Y6I4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USP3Q9Y6I4 AL365361.1-201ENST00000566942 3481 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 RNU6-813P-201ENST00000384691 107 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 BTF3P4-201ENST00000418852 495 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 SNORA59A-201ENST00000459326 152 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 AC099513.1-201ENST00000490423 301 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 MIR8055-201ENST00000610739 97 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 AC091304.10-201ENST00000641554 121 ntBASIC2.75□□□□□ -1.97
USP3Q9Y6I4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.75□□□□□ -1.97
USP3Q9Y6I4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.75□□□□□ -1.97
USP3Q9Y6I4 SNORD38.1-201ENST00000363863 68 ntBASIC2.74□□□□□ -1.97
USP3Q9Y6I4 SNORA32-201ENST00000384072 121 ntBASIC2.74□□□□□ -1.97
USP3Q9Y6I4 AL023284.1-201ENST00000403956 276 ntBASIC2.74□□□□□ -1.97
USP3Q9Y6I4 RNU6-1190P-201ENST00000410811 104 ntBASIC2.74□□□□□ -1.97
USP3Q9Y6I4 RNA5SP501-201ENST00000410990 112 ntBASIC2.74□□□□□ -1.97
USP3Q9Y6I4 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.74□□□□□ -1.97
USP3Q9Y6I4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP3Q9Y6I4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
USP3Q9Y6I4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
USP3Q9Y6I4 RNU6-1123P-201ENST00000362347 106 ntBASIC2.73□□□□□ -1.97
USP3Q9Y6I4 RPL39P39-201ENST00000455840 151 ntBASIC2.73□□□□□ -1.97
USP3Q9Y6I4 RNU7-35P-201ENST00000517174 62 ntBASIC2.73□□□□□ -1.97
USP3Q9Y6I4 MIR548Z-201ENST00000584743 97 ntBASIC2.73□□□□□ -1.97
USP3Q9Y6I4 FAM106DP-201ENST00000586416 501 ntBASIC2.73□□□□□ -1.97
USP3Q9Y6I4 Z97988.1-201ENST00000637697 135 ntBASIC2.73□□□□□ -1.97
USP3Q9Y6I4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.73□□□□□ -1.97
USP3Q9Y6I4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
USP3Q9Y6I4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.73□□□□□ -1.97
USP3Q9Y6I4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.73□□□□□ -1.97
USP3Q9Y6I4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.73□□□□□ -1.97
USP3Q9Y6I4 AC009487.2-201ENST00000420969 6821 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNA5SP68-201ENST00000363885 119 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-1276P-201ENST00000365372 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 MIR196B-201ENST00000384852 84 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-447P-201ENST00000410293 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-1118P-201ENST00000410382 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-1076P-201ENST00000410397 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-355P-201ENST00000410427 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-791P-201ENST00000410467 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-705P-201ENST00000410601 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-1100P-201ENST00000410691 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-860P-201ENST00000410860 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 RNU6-1217P-201ENST00000411276 104 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms