Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 RPS27P29-201ENST00000463110 252 ntBASIC3.32□□□□□ -1.88
PCDHB3Q9Y5E6 MIR3134-201ENST00000579433 74 ntBASIC3.32□□□□□ -1.88
PCDHB3Q9Y5E6 AC005786.1-201ENST00000588553 154 ntBASIC3.32□□□□□ -1.88
PCDHB3Q9Y5E6 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.32□□□□□ -1.88
PCDHB3Q9Y5E6 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCDHB3Q9Y5E6 SNORA11.2-201ENST00000408318 127 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 RNA5SP293-201ENST00000410527 113 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 AC005326.1-201ENST00000429197 123 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 HMGN1P18-201ENST00000457642 277 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 SCARNA18B-201ENST00000458806 135 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 SCARNA15.3-201ENST00000626315 122 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 SCARNA4.1-201ENST00000628597 123 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 AL356274.2-201ENST00000624379 3752 ntBASIC3.31□□□□□ -1.88
PCDHB3Q9Y5E6 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 SNORD4B-201ENST00000459083 72 ntBASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 RPL12P50-201ENST00000603116 116 ntBASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 AP001362.1-201ENST00000625165 124 ntBASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
PCDHB3Q9Y5E6 Y_RNA.354-201ENST00000365448 111 ntBASIC3.29□□□□□ -1.88
PCDHB3Q9Y5E6 RNU6-950P-201ENST00000384651 107 ntBASIC3.29□□□□□ -1.88
PCDHB3Q9Y5E6 RNU6-1031P-201ENST00000384773 107 ntBASIC3.29□□□□□ -1.88
PCDHB3Q9Y5E6 RNU6-557P-201ENST00000516842 110 ntBASIC3.29□□□□□ -1.88
PCDHB3Q9Y5E6 AC104027.1-201ENST00000521887 300 ntBASIC3.29□□□□□ -1.88
PCDHB3Q9Y5E6 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 MIRLET7A1-201ENST00000362295 80 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 RNA5SP383-201ENST00000362934 120 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 SNORD115-3-201ENST00000363100 82 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 MIR526A1-201ENST00000384897 85 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 SNORA48.2-201ENST00000390926 124 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 SNORA40.18-201ENST00000391200 128 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 SNORA64.4-201ENST00000516632 81 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 IGKV2-26-201ENST00000518305 343 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 MIR5094-201ENST00000578766 85 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 MIR8057-201ENST00000620957 69 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 Z97988.1-201ENST00000637697 135 ntBASIC3.28□□□□□ -1.88
PCDHB3Q9Y5E6 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
PCDHB3Q9Y5E6 AL355596.1-201ENST00000565399 3996 ntBASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 RNU6-1067P-201ENST00000384752 107 ntBASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 snoU13.11-201ENST00000459219 104 ntBASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 AC125388.1-201ENST00000459631 156 ntBASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 AC092185.1-201ENST00000491371 97 ntBASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 RNA5SP380-201ENST00000517190 98 ntBASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 AP000648.3-201ENST00000623539 4507 ntBASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
PCDHB3Q9Y5E6 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PCDHB3Q9Y5E6 RNU6-411P-201ENST00000384451 107 ntBASIC3.26□□□□□ -1.89
PCDHB3Q9Y5E6 MIR128-1-201ENST00000384921 82 ntBASIC3.26□□□□□ -1.89
PCDHB3Q9Y5E6 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC3.26□□□□□ -1.89
PCDHB3Q9Y5E6 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC3.26□□□□□ -1.89
PCDHB3Q9Y5E6 AC073476.4-201ENST00000628409 72 ntBASIC3.26□□□□□ -1.89
PCDHB3Q9Y5E6 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PCDHB3Q9Y5E6 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 HSBP1P2-201ENST00000299671 229 ntBASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 RNU1-58P-201ENST00000362413 163 ntBASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 SNORD56.3-201ENST00000363507 71 ntBASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 RNU6-686P-201ENST00000364839 107 ntBASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 Y_RNA.340-201ENST00000365330 92 ntBASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 SNORD21-201ENST00000383953 95 ntBASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 MIR5680-201ENST00000577577 84 ntBASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PCDHB3Q9Y5E6 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 SNORA63.2-201ENST00000362603 126 ntBASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 RPL23AP6-201ENST00000446637 472 ntBASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 SNORA59A-201ENST00000459326 152 ntBASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 RNU6-871P-201ENST00000516122 100 ntBASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 MIR4276-201ENST00000584832 70 ntBASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 SNORD14A-201ENST00000606526 91 ntBASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 MIR8066-201ENST00000617280 78 ntBASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.24□□□□□ -1.89
PCDHB3Q9Y5E6 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 RNU6-461P-201ENST00000364195 107 ntBASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 RNU6-380P-201ENST00000410207 107 ntBASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 RN7SKP132-201ENST00000516001 208 ntBASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 RNU6-1015P-201ENST00000517121 99 ntBASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 MIR3616-201ENST00000584070 92 ntBASIC3.23□□□□□ -1.89
PCDHB3Q9Y5E6 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PCDHB3Q9Y5E6 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
PCDHB3Q9Y5E6 MIR148B-201ENST00000362252 99 ntBASIC3.22□□□□□ -1.89
PCDHB3Q9Y5E6 RNY1P13-201ENST00000365030 105 ntBASIC3.22□□□□□ -1.89
PCDHB3Q9Y5E6 Y_RNA.508-201ENST00000384502 114 ntBASIC3.22□□□□□ -1.89
PCDHB3Q9Y5E6 RN7SKP220-201ENST00000410611 288 ntBASIC3.22□□□□□ -1.89
PCDHB3Q9Y5E6 RNU7-85P-201ENST00000458851 63 ntBASIC3.22□□□□□ -1.89
PCDHB3Q9Y5E6 SCARNA16.3-201ENST00000516595 184 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms