Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC104996.3-201ENST00000590718 94 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 AC069114.2-201ENST00000604699 304 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 SNORA68.1-201ENST00000364537 132 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 Y_RNA.333-201ENST00000365274 102 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 Y_RNA.491-201ENST00000384417 107 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 MIR23A-201ENST00000385245 73 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 YWHAEP2-201ENST00000580066 112 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 MIR3064-201ENST00000581130 66 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 YWHAEP3-201ENST00000582767 121 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 AL357312.1-201ENST00000603879 298 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 SNORA51-201ENST00000606420 132 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 U4.6-201ENST00000621618 127 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 AC022513.1-201ENST00000624512 117 ntBASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS9D1Q9Y2B5 SNORD46.1-201ENST00000364139 104 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 SNORA5A-201ENST00000384111 134 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 MIR449B-201ENST00000384995 97 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 MIR591-201ENST00000385290 95 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 MIR548U-201ENST00000390728 81 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 RPS27P21-201ENST00000486977 252 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 AC026403.1-201ENST00000518938 295 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 MIR4500-201ENST00000579472 76 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 AC008739.3-201ENST00000603262 127 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 AC009093.8-201ENST00000641769 292 ntBASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS9D1Q9Y2B5 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 RNU6-132P-201ENST00000383863 107 ntBASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 RNU6-630P-201ENST00000391258 106 ntBASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 RNA5SP237-201ENST00000410414 113 ntBASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 AC005908.1-201ENST00000468701 347 ntBASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 SNORA70.18-201ENST00000516696 98 ntBASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 AC141846.1-201ENST00000568348 142 ntBASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 AC005786.1-201ENST00000588553 154 ntBASIC3.42□□□□□ -1.86
VPS9D1Q9Y2B5 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 RNA5SP119-201ENST00000362715 117 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 RNA5SP72-201ENST00000364442 117 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 RNU6-571P-201ENST00000384128 107 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 RNU6-614P-201ENST00000384369 107 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 RNU6-1031P-201ENST00000384773 107 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 MIR526A1-201ENST00000384897 85 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 AC027119.1-201ENST00000440877 241 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 AC104027.1-201ENST00000521887 300 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 MIR3922-201ENST00000585192 84 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 U6.59-201ENST00000615686 107 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 AC012314.7-201ENST00000619693 93 ntBASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS9D1Q9Y2B5 Y_RNA.36-201ENST00000362602 112 ntBASIC3.4□□□□□ -1.87
VPS9D1Q9Y2B5 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
VPS9D1Q9Y2B5 SNORA11.1-201ENST00000408133 129 ntBASIC3.4□□□□□ -1.87
VPS9D1Q9Y2B5 AC003685.2-201ENST00000422795 395 ntBASIC3.4□□□□□ -1.87
VPS9D1Q9Y2B5 MIR7153-201ENST00000637758 57 ntBASIC3.4□□□□□ -1.87
VPS9D1Q9Y2B5 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
VPS9D1Q9Y2B5 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
VPS9D1Q9Y2B5 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 MIR30E-201ENST00000362104 92 ntBASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 MIR218-2-201ENST00000385006 110 ntBASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 RNU4ATAC9P-201ENST00000517146 126 ntBASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 SNORD92-201ENST00000585078 85 ntBASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 AL161756.2-201ENST00000604597 246 ntBASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 SCARNA15.3-201ENST00000626315 122 ntBASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 SNORA50A-202ENST00000629536 136 ntBASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS9D1Q9Y2B5 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 SNORA25.4-201ENST00000363666 124 ntBASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 RNU6-75P-201ENST00000515944 104 ntBASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS9D1Q9Y2B5 AL161722.3-201ENST00000605789 2983 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 Y_RNA.283-201ENST00000364798 112 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 RNU1-109P-201ENST00000383960 147 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 SNORD38B-201ENST00000384690 67 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 MIR942-201ENST00000401111 86 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 SNORA74.3-201ENST00000517108 154 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 MIR3944-201ENST00000581277 108 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 SNORD38B-202ENST00000625943 69 ntBASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS9D1Q9Y2B5 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 AL356274.2-201ENST00000624379 3752 ntBASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 SNORD36A-201ENST00000362874 73 ntBASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms