Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 uc_338.20-201ENST00000621563 178 ntBASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.02□□□□□ -2.09
TRIM39Q9HCM9 SNORD114-1-201ENST00000362705 72 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 MIR539-201ENST00000365690 78 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 Y_RNA.440-201ENST00000384120 114 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 SNORA20-201ENST00000384662 132 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 RNU6-257P-201ENST00000410238 98 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 RNA5SP338-201ENST00000410495 85 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 RNA5SP489-201ENST00000410986 109 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 RNU6-717P-201ENST00000459076 104 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 RNU7-43P-201ENST00000516554 64 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 Y_RNA.692-201ENST00000516627 105 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 AC090821.2-201ENST00000523552 176 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 AL513534.2-201ENST00000603836 250 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 AL357312.1-201ENST00000603879 298 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 AC011603.4-201ENST00000611325 277 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 MTND5P32-201ENST00000560711 1802 ntBASIC2.01□□□□□ -2.09
TRIM39Q9HCM9 ZNF355P-201ENST00000427301 3216 ntBASIC2□□□□□ -2.09
TRIM39Q9HCM9 RNA5SP160-201ENST00000364866 120 ntBASIC2□□□□□ -2.09
TRIM39Q9HCM9 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2□□□□□ -2.09
TRIM39Q9HCM9 RNU6-938P-201ENST00000411285 103 ntBASIC2□□□□□ -2.09
TRIM39Q9HCM9 snoU13.15-201ENST00000459407 104 ntBASIC2□□□□□ -2.09
TRIM39Q9HCM9 RNA5SP272-201ENST00000516095 111 ntBASIC2□□□□□ -2.09
TRIM39Q9HCM9 Y_RNA.783-201ENST00000613546 102 ntBASIC2□□□□□ -2.09
TRIM39Q9HCM9 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2□□□□□ -2.09
TRIM39Q9HCM9 U8.1-201ENST00000362843 134 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 Y_RNA.351-201ENST00000365436 96 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 RNU6-1065P-201ENST00000384513 106 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 Y_RNA.586-201ENST00000391146 98 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 AL603914.1-201ENST00000401964 204 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 MTND4LP9-201ENST00000427694 174 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 RNU7-96P-201ENST00000459535 64 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 Y_RNA.690-201ENST00000516603 95 ntBASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
TRIM39Q9HCM9 SNX2P2-201ENST00000424553 323 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 AC025033.1-201ENST00000463883 194 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 RPS29P24-201ENST00000486345 171 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 RPS26P48-201ENST00000491713 339 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 AC079140.2-201ENST00000506193 142 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 AC008834.1-201ENST00000511612 175 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 RNU6-406P-201ENST00000516470 107 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 RNU1-40P-201ENST00000516816 164 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 RNU1-97P-201ENST00000516872 164 ntBASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
TRIM39Q9HCM9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 MIR302B-201ENST00000362188 73 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 RNY1P11-201ENST00000363759 113 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 RNU1-133P-201ENST00000364867 167 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 MIR520C-201ENST00000385005 87 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 UBL5P3-201ENST00000475112 231 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 RNU7-53P-201ENST00000516705 60 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 SCARNA15-202ENST00000516881 127 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 MIR548AR-201ENST00000582191 57 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 AC104984.5-201ENST00000586878 94 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 MIR6715A-201ENST00000615929 79 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 MIR376A2-201ENST00000636782 80 ntBASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
TRIM39Q9HCM9 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 Y_RNA.537-201ENST00000384626 109 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 RNU7-67P-201ENST00000459003 62 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 snoU13.26-201ENST00000459452 105 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 AC005908.1-201ENST00000468701 347 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 Y_RNA.686-201ENST00000516548 134 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 RNU6-922P-201ENST00000516753 99 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 MIR5089-201ENST00000580047 84 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.96□□□□□ -2.1
TRIM39Q9HCM9 AC019129.1-201ENST00000403786 261 ntBASIC1.95□□□□□ -2.1
TRIM39Q9HCM9 AL035398.1-201ENST00000430869 322 ntBASIC1.95□□□□□ -2.1
TRIM39Q9HCM9 RPS29P29-201ENST00000456396 171 ntBASIC1.95□□□□□ -2.1
TRIM39Q9HCM9 RNU5E-3P-201ENST00000515913 68 ntBASIC1.95□□□□□ -2.1
TRIM39Q9HCM9 RNU6-113P-201ENST00000516653 101 ntBASIC1.95□□□□□ -2.1
TRIM39Q9HCM9 MIR3937-201ENST00000580135 106 ntBASIC1.95□□□□□ -2.1
TRIM39Q9HCM9 MIR4764-201ENST00000580680 88 ntBASIC1.95□□□□□ -2.1
TRIM39Q9HCM9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 MIR342-201ENST00000362212 99 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 SNORD1A-201ENST00000364968 72 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 RNU6-81P-201ENST00000365608 104 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 SNORA51.10-201ENST00000384418 136 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 RNU6-998P-201ENST00000515894 101 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 RNA5SP236-201ENST00000516169 116 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 SNORD111.1-201ENST00000516421 86 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 MIR4422-201ENST00000581938 83 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 MIR3935-201ENST00000583472 104 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 AL022345.2-201ENST00000606307 135 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 AC243994.1-201ENST00000618627 109 ntBASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
TRIM39Q9HCM9 SNORD28B-201ENST00000390993 75 ntBASIC1.93□□□□□ -2.1
TRIM39Q9HCM9 RPL39P39-201ENST00000455840 151 ntBASIC1.93□□□□□ -2.1
TRIM39Q9HCM9 RNU6-1211P-201ENST00000459179 105 ntBASIC1.93□□□□□ -2.1
TRIM39Q9HCM9 RPL30P7-201ENST00000479312 323 ntBASIC1.93□□□□□ -2.1
TRIM39Q9HCM9 RN7SL274P-201ENST00000492268 272 ntBASIC1.93□□□□□ -2.1
TRIM39Q9HCM9 RNU2-60P-201ENST00000517290 128 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms