Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNU6-711P-201ENST00000517255 106 ntBASIC5.8□□□□□ -1.48
SENP3Q9H4L4 MIR5684-201ENST00000585074 65 ntBASIC5.8□□□□□ -1.48
SENP3Q9H4L4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.8□□□□□ -1.48
SENP3Q9H4L4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
SENP3Q9H4L4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
SENP3Q9H4L4 RNU1-44P-201ENST00000384453 163 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 SNORD96B-201ENST00000386148 79 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 MT-TN-201ENST00000387400 73 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 RNA5SP296-201ENST00000410523 111 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 SNORA74C-2-201ENST00000411179 201 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.79□□□□□ -1.48
SENP3Q9H4L4 AC025627.2-201ENST00000576220 160 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 AC087499.8-201ENST00000578406 226 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 MIR6082-201ENST00000613604 109 ntBASIC5.79□□□□□ -1.48
SENP3Q9H4L4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SENP3Q9H4L4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC5.79□□□□□ -1.48
SENP3Q9H4L4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC5.78□□□□□ -1.48
SENP3Q9H4L4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SENP3Q9H4L4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC5.78□□□□□ -1.48
SENP3Q9H4L4 SNORD115-44-201ENST00000365391 82 ntBASIC5.78□□□□□ -1.48
SENP3Q9H4L4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC5.78□□□□□ -1.48
SENP3Q9H4L4 RNA5SP481-201ENST00000516814 122 ntBASIC5.78□□□□□ -1.48
SENP3Q9H4L4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.78□□□□□ -1.48
SENP3Q9H4L4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
SENP3Q9H4L4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
SENP3Q9H4L4 SNORA40.16-201ENST00000517238 121 ntBASIC5.77□□□□□ -1.49
SENP3Q9H4L4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.77□□□□□ -1.49
SENP3Q9H4L4 U4.4-201ENST00000620626 117 ntBASIC5.77□□□□□ -1.49
SENP3Q9H4L4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3Q9H4L4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3Q9H4L4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC5.77□□□□□ -1.49
SENP3Q9H4L4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3Q9H4L4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.76□□□□□ -1.49
SENP3Q9H4L4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.76□□□□□ -1.49
SENP3Q9H4L4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SENP3Q9H4L4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.76□□□□□ -1.49
SENP3Q9H4L4 AL035423.1-201ENST00000420331 213 ntBASIC5.76□□□□□ -1.49
SENP3Q9H4L4 MIR2115-201ENST00000516657 100 ntBASIC5.76□□□□□ -1.49
SENP3Q9H4L4 NEAT1-202ENST00000501122 22743 ntBASIC5.76□□□□□ -1.49
SENP3Q9H4L4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC5.75□□□□□ -1.49
SENP3Q9H4L4 RN7SL429P-201ENST00000479090 223 ntBASIC5.75□□□□□ -1.49
SENP3Q9H4L4 RN7SL489P-201ENST00000486185 223 ntBASIC5.75□□□□□ -1.49
SENP3Q9H4L4 RN7SL327P-201ENST00000488659 223 ntBASIC5.75□□□□□ -1.49
SENP3Q9H4L4 MIR432-201ENST00000606207 94 ntBASIC5.75□□□□□ -1.49
SENP3Q9H4L4 RN7SL853P-201ENST00000617250 223 ntBASIC5.75□□□□□ -1.49
SENP3Q9H4L4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.75□□□□□ -1.49
SENP3Q9H4L4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SENP3Q9H4L4 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SENP3Q9H4L4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.75□□□□□ -1.49
SENP3Q9H4L4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SENP3Q9H4L4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 RNU11-3P-201ENST00000391111 133 ntBASIC5.74□□□□□ -1.49
SENP3Q9H4L4 RNVU1-2-201ENST00000516326 135 ntBASIC5.74□□□□□ -1.49
SENP3Q9H4L4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3Q9H4L4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SENP3Q9H4L4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.73□□□□□ -1.49
SENP3Q9H4L4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SENP3Q9H4L4 AL138878.1-201ENST00000405131 347 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 RHEBP3-201ENST00000411920 351 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 MIR18B-201ENST00000454574 71 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 AC108751.2-201ENST00000469993 231 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 AC055731.1-201ENST00000474387 401 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 RNA5SP164-201ENST00000516533 110 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 SNORA31.15-201ENST00000516771 132 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 MIR8058-201ENST00000615737 89 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 MIR6715A-201ENST00000615929 79 ntBASIC5.73□□□□□ -1.49
SENP3Q9H4L4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SENP3Q9H4L4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SENP3Q9H4L4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.72□□□□□ -1.49
SENP3Q9H4L4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.72□□□□□ -1.49
SENP3Q9H4L4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SENP3Q9H4L4 RNU6-247P-201ENST00000362636 107 ntBASIC5.72□□□□□ -1.49
SENP3Q9H4L4 RNU6-54P-201ENST00000365563 107 ntBASIC5.72□□□□□ -1.49
SENP3Q9H4L4 MIR490-201ENST00000384865 128 ntBASIC5.72□□□□□ -1.49
SENP3Q9H4L4 MIR216B-201ENST00000390186 82 ntBASIC5.72□□□□□ -1.49
SENP3Q9H4L4 SNORA48.1-201ENST00000390879 135 ntBASIC5.72□□□□□ -1.49
SENP3Q9H4L4 SNORA40.17-201ENST00000517256 115 ntBASIC5.72□□□□□ -1.49
SENP3Q9H4L4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SENP3Q9H4L4 MAPK10-362ENST00000641864 4484 ntBASIC5.72□□□□□ -1.49
SENP3Q9H4L4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SENP3Q9H4L4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SENP3Q9H4L4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SENP3Q9H4L4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.71□□□□□ -1.5
SENP3Q9H4L4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.71□□□□□ -1.5
SENP3Q9H4L4 AC098934.3-201ENST00000430450 190 ntBASIC5.71□□□□□ -1.5
SENP3Q9H4L4 AC021146.9-201ENST00000512503 156 ntBASIC5.71□□□□□ -1.5
SENP3Q9H4L4 RNU7-174P-201ENST00000516248 59 ntBASIC5.71□□□□□ -1.5
SENP3Q9H4L4 MIR3192-201ENST00000584920 77 ntBASIC5.71□□□□□ -1.5
SENP3Q9H4L4 AC022202.1-201ENST00000613515 211 ntBASIC5.71□□□□□ -1.5
SENP3Q9H4L4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms