Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 AC073325.2-201ENST00000339545 159 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 RNU4-82P-201ENST00000362443 140 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 SNORD56.3-201ENST00000363507 71 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 RNU6-301P-201ENST00000384277 107 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 MIR218-1-201ENST00000384999 110 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 MIR516B2-201ENST00000385190 85 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 AC105272.1-201ENST00000438604 198 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 AC009969.1-201ENST00000438726 172 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 RPS29P29-201ENST00000456396 171 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 RNU7-48P-201ENST00000458875 63 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 AC006483.1-201ENST00000487308 313 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 RN7SKP132-201ENST00000516001 208 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 SCARNA17.1-201ENST00000516211 143 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 SCARNA17.2-201ENST00000516334 143 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 SCARNA20.6-201ENST00000517251 106 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 AL020996.3-201ENST00000606617 222 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 SCARNA17.4-201ENST00000614296 143 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 MIR1297-201ENST00000637311 77 ntBASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
NPAS3Q8IXF0 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 RNU1-23P-201ENST00000363361 144 ntBASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 RNA5SP126-201ENST00000365092 109 ntBASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 SNORA48.8-201ENST00000391324 134 ntBASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 RNU7-79P-201ENST00000516082 62 ntBASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 SNORA31.21-201ENST00000517180 77 ntBASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 MIR8066-201ENST00000617280 78 ntBASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NPAS3Q8IXF0 Y_RNA.98-201ENST00000363109 102 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 SNORA1.2-201ENST00000365189 134 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 SNORD77.2-201ENST00000391045 68 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 RNA5SP293-201ENST00000410527 113 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 RNA5SP38-201ENST00000410750 119 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 RN7SL297P-201ENST00000483161 293 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 RNU7-137P-201ENST00000516788 62 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 MIR4319-201ENST00000577285 85 ntBASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
NPAS3Q8IXF0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 MIR633-201ENST00000384821 98 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 RNA5SP109-201ENST00000391010 116 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 RNU6-602P-201ENST00000411155 105 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 ATP5J2P3-201ENST00000451550 258 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 AC023790.1-201ENST00000482174 347 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 RNU1-143P-201ENST00000516296 146 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 U1.23-201ENST00000610293 146 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 RNU1-68P-201ENST00000615382 146 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 U1.39-201ENST00000621562 146 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 SNORA50A-202ENST00000629536 136 ntBASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NPAS3Q8IXF0 RNU6-811P-201ENST00000384069 107 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 SRIP3-201ENST00000413200 219 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 HMGN2P16-201ENST00000456802 261 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 AL031183.1-201ENST00000457667 207 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 CKS1BP2-201ENST00000497342 240 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 RNA5SP217-201ENST00000515959 91 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 SNORA18.5-201ENST00000516616 101 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.1□□□□□ -1.91
NPAS3Q8IXF0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 AC062016.1-201ENST00000355719 319 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 MIRLET7C-201ENST00000362160 84 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 RNU6-862P-201ENST00000362804 105 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 SNORD114-6-201ENST00000364393 72 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 SNORA8.1-201ENST00000384250 140 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 MIR591-201ENST00000385290 95 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 RNU6-630P-201ENST00000391258 106 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 RNU4-83P-201ENST00000410863 133 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 TRIAP1P1-201ENST00000427062 225 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 RPS27P29-201ENST00000463110 252 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 RNU7-28P-201ENST00000516759 62 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 RNU6-303P-201ENST00000517091 106 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 AC024995.1-201ENST00000523014 93 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 AP001362.1-201ENST00000625165 124 ntBASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.09□□□□□ -1.91
NPAS3Q8IXF0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
NPAS3Q8IXF0 RNU6-208P-201ENST00000362431 107 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 SNORD114-10-201ENST00000363409 72 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 RNU6-1083P-201ENST00000384022 107 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 RNU6-851P-201ENST00000384565 107 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 RNU6-1237P-201ENST00000384777 107 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 RNA5SP184-201ENST00000411071 108 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 AC108938.1-201ENST00000451204 136 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 AC092185.1-201ENST00000491371 97 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 AL512598.1-201ENST00000610158 273 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 AC243994.1-201ENST00000618627 109 ntBASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
NPAS3Q8IXF0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms