Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 SNORD115-28-201ENST00000363931 81 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNU6-342P-201ENST00000384521 104 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 MIR222-201ENST00000384992 110 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 MIR452-201ENST00000385020 85 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNU4-43P-201ENST00000410628 137 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNU7-120P-201ENST00000459334 63 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNU6-1270P-201ENST00000517128 108 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 MIR4422-201ENST00000581938 83 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 AL078603.1-201ENST00000603824 313 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNU6-1209P-201ENST00000363655 107 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNA5SP153-201ENST00000516498 76 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNU7-25P-201ENST00000516544 62 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 RNU7-181P-201ENST00000517234 74 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 SNORD3E-202ENST00000627253 216 ntBASIC1.32□□□□□ -2.2
SMCHD1A6NHR9 AC245060.5-201ENST00000610778 3293 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 MIR373-201ENST00000362273 69 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 RNU6-768P-201ENST00000384683 107 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.572-201ENST00000384757 98 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 SNRPGP10-201ENST00000432323 225 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 RNA5SP57-201ENST00000459463 123 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 AC099513.1-201ENST00000490423 301 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 SNORA18.7-201ENST00000516910 131 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 AC106754.2-201ENST00000623006 233 ntBASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.304-201ENST00000365011 112 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.400-201ENST00000383963 111 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 RNU6-643P-201ENST00000384018 107 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 MIR516B2-201ENST00000385190 85 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 SNORA40.5-201ENST00000391061 128 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 U8.17-201ENST00000391292 132 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 HMGN2P32-201ENST00000444648 269 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 RNU6-917P-201ENST00000516294 104 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 RNU7-43P-201ENST00000516554 64 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 RNU6-182P-201ENST00000516970 105 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 AC134878.1-201ENST00000619901 243 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 RNY1-201ENST00000364228 113 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 RNU4-38P-201ENST00000364472 129 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 SNORA1.2-201ENST00000365189 134 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 AL034345.1-201ENST00000407768 123 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 RNU2-11P-201ENST00000459191 187 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 AC005908.1-201ENST00000468701 347 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 AC087685.1-201ENST00000587507 141 ntBASIC1.3□□□□□ -2.2
SMCHD1A6NHR9 MIR424-201ENST00000362227 98 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.29-201ENST00000362570 113 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.91-201ENST00000363042 107 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 MIR520C-201ENST00000385005 87 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 AL392103.1-201ENST00000447000 198 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.666-201ENST00000516187 112 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 MIR548AR-201ENST00000582191 57 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 MIR6788-201ENST00000618842 66 ntBASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.29□□□□□ -2.2
SMCHD1A6NHR9 RNU6-1020P-201ENST00000363684 107 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 SNORD114-27-201ENST00000363766 70 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 MIR30A-201ENST00000385092 71 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 MIR624-201ENST00000385217 97 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 AC245047.7-201ENST00000440265 293 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 AC074198.2-201ENST00000508153 258 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.797-201ENST00000515977 94 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 RNU6-561P-201ENST00000516222 102 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 Y_RNA.700-201ENST00000516806 100 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 RNU6-80P-201ENST00000384195 107 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 MIR758-201ENST00000390227 88 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 RPL39P39-201ENST00000455840 151 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 RNU6-998P-201ENST00000515894 101 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 AL512310.8-201ENST00000550183 120 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 SEPT14P17-201ENST00000617978 177 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 MIR6844-201ENST00000637122 62 ntBASIC1.28□□□□□ -2.2
SMCHD1A6NHR9 SNORD33-201ENST00000362761 85 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 RNU6-1228P-201ENST00000391014 107 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 RNU6-113P-201ENST00000516653 101 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 IGKV1-22-201ENST00000524313 326 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.393-201ENST00000383936 102 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 PCNPP3-201ENST00000393579 471 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 SEPT7P4-201ENST00000437076 306 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 SNORD45.4-201ENST00000516629 73 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 MIR3668-201ENST00000582138 75 ntBASIC1.27□□□□□ -2.21
SMCHD1A6NHR9 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.272-201ENST00000364696 102 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.494-201ENST00000384432 111 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 RNA5SP127-201ENST00000411051 133 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 STAG3L5P-204ENST00000443759 179 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 AL138752.1-201ENST00000452964 351 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 SNORA31.10-201ENST00000516482 106 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms