Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 MIR5002-201ENST00000584713 97 ntBASIC2.42□□□□□ -2.02
DDX41Q9UJV9 TUG1_4.1-201ENST00000619464 181 ntBASIC2.42□□□□□ -2.02
DDX41Q9UJV9 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.42□□□□□ -2.02
DDX41Q9UJV9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
DDX41Q9UJV9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
DDX41Q9UJV9 Y_RNA.37-201ENST00000362606 108 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 RNU6-203P-201ENST00000384038 104 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 SNORD77.3-201ENST00000391113 65 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 AF228730.3-201ENST00000436691 102 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 AL603825.1-201ENST00000438481 80 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 MTATP6P21-201ENST00000440681 189 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 RNU7-197P-201ENST00000458836 62 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 RPL23AP42-201ENST00000471152 471 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 RNU6-406P-201ENST00000516470 107 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 AP001340.1-201ENST00000624405 217 ntBASIC2.41□□□□□ -2.02
DDX41Q9UJV9 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
DDX41Q9UJV9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.41□□□□□ -2.02
DDX41Q9UJV9 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
DDX41Q9UJV9 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.4□□□□□ -2.02
DDX41Q9UJV9 Y_RNA.251-201ENST00000364551 99 ntBASIC2.4□□□□□ -2.03
DDX41Q9UJV9 MIR516B2-201ENST00000385190 85 ntBASIC2.4□□□□□ -2.03
DDX41Q9UJV9 RNU6-460P-201ENST00000391158 108 ntBASIC2.4□□□□□ -2.03
DDX41Q9UJV9 SNORA44.1-201ENST00000517031 108 ntBASIC2.4□□□□□ -2.03
DDX41Q9UJV9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.4□□□□□ -2.03
DDX41Q9UJV9 MIR8074-201ENST00000615081 81 ntBASIC2.4□□□□□ -2.03
DDX41Q9UJV9 uc_338.20-201ENST00000621563 178 ntBASIC2.4□□□□□ -2.03
DDX41Q9UJV9 Y_RNA.120-201ENST00000363304 110 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 SNORA1.2-201ENST00000365189 134 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
DDX41Q9UJV9 RNA5SP233-201ENST00000459153 113 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 AC107297.1-201ENST00000459991 176 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 RNA5SP272-201ENST00000516095 111 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 RNU6-548P-201ENST00000517083 115 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 SUMO2P16-201ENST00000519475 264 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 AP003484.1-201ENST00000530974 250 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
DDX41Q9UJV9 AL359851.1-201ENST00000569460 4997 ntBASIC2.39□□□□□ -2.03
DDX41Q9UJV9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
DDX41Q9UJV9 SNORA20-201ENST00000384662 132 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 MIR194-1-201ENST00000384892 85 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 MIR676-201ENST00000390702 67 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 RNU6-257P-201ENST00000410238 98 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 AL021397.1-201ENST00000451806 248 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 RNU6-322P-201ENST00000516010 103 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 Y_RNA.757-201ENST00000578934 114 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 MIR3935-201ENST00000583472 104 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 AL627230.6-201ENST00000611129 280 ntBASIC2.38□□□□□ -2.03
DDX41Q9UJV9 MIR539-201ENST00000365690 78 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 RNU6-439P-201ENST00000384188 106 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 Y_RNA.586-201ENST00000391146 98 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 AC025033.1-201ENST00000463883 194 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 MIR514B-201ENST00000516774 80 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 SNORA18.7-201ENST00000516910 131 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 RNU7-70P-201ENST00000516941 66 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 MIR5197-201ENST00000583721 112 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 FAM106DP-201ENST00000586416 501 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 AC011603.4-201ENST00000611325 277 ntBASIC2.37□□□□□ -2.03
DDX41Q9UJV9 Y_RNA.52-201ENST00000362760 96 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 RNA5SP160-201ENST00000364866 120 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 RNU6-915P-201ENST00000364943 103 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 SNORA2.2-201ENST00000365473 135 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 RNA5SP259-201ENST00000365541 109 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 MIR513A1-201ENST00000385138 129 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
DDX41Q9UJV9 U8.17-201ENST00000391292 132 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 AL627390.1-201ENST00000396055 340 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 RNU4-57P-201ENST00000515980 135 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 Y_RNA.692-201ENST00000516627 105 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 RNU1-40P-201ENST00000516816 164 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 RNU1-97P-201ENST00000516872 164 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 U7.2-201ENST00000607576 63 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 AL353997.5-201ENST00000618886 171 ntBASIC2.36□□□□□ -2.03
DDX41Q9UJV9 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
DDX41Q9UJV9 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.35□□□□□ -2.03
DDX41Q9UJV9 RNU6-457P-201ENST00000363999 107 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 Y_RNA.241-201ENST00000364470 117 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 RNU6-1067P-201ENST00000384752 107 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 HMGN2P19-201ENST00000425149 265 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 MTND4LP9-201ENST00000427694 174 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 HMGN2P23-201ENST00000456759 269 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 RNA5SP364-201ENST00000516938 78 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 AC106754.2-201ENST00000623006 233 ntBASIC2.35□□□□□ -2.03
DDX41Q9UJV9 AP000648.3-201ENST00000623539 4507 ntBASIC2.34□□□□□ -2.03
DDX41Q9UJV9 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.34□□□□□ -2.03
DDX41Q9UJV9 RNU6-81P-201ENST00000365608 104 ntBASIC2.34□□□□□ -2.03
DDX41Q9UJV9 SNORA40.5-201ENST00000391061 128 ntBASIC2.34□□□□□ -2.03
DDX41Q9UJV9 AL161935.2-201ENST00000414627 60 ntBASIC2.34□□□□□ -2.03
DDX41Q9UJV9 SNORD36C-201ENST00000516733 66 ntBASIC2.34□□□□□ -2.03
DDX41Q9UJV9 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.34□□□□□ -2.03
DDX41Q9UJV9 AC095038.3-201ENST00000634439 195 ntBASIC2.34□□□□□ -2.03
DDX41Q9UJV9 U2.22-201ENST00000636441 106 ntBASIC2.34□□□□□ -2.03
DDX41Q9UJV9 ZNF355P-201ENST00000427301 3216 ntBASIC2.34□□□□□ -2.04
DDX41Q9UJV9 U8.1-201ENST00000362843 134 ntBASIC2.33□□□□□ -2.04
DDX41Q9UJV9 MIR526A1-201ENST00000384897 85 ntBASIC2.33□□□□□ -2.04
DDX41Q9UJV9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
DDX41Q9UJV9 U8.13-201ENST00000390842 128 ntBASIC2.33□□□□□ -2.04
DDX41Q9UJV9 AL603914.1-201ENST00000401964 204 ntBASIC2.33□□□□□ -2.04
DDX41Q9UJV9 SUMO2P12-201ENST00000405924 140 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms