Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU6-1040P-201ENST00000383974 107 ntBASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 SNORD114-4-201ENST00000363962 75 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 RNU6-378P-201ENST00000384324 107 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 MTCYBP2-201ENST00000407745 171 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 RNU6-572P-201ENST00000516724 80 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 CPDP1-201ENST00000579660 283 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 Y_RNA.463-201ENST00000384271 102 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 RNU6-1179P-201ENST00000384667 107 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 MIR519E-201ENST00000385075 84 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 BX295541.1-201ENST00000417774 250 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 AL158211.4-201ENST00000606988 584 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 AF250324.2-201ENST00000608299 610 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 AC231657.1-201ENST00000624313 397 ntBASIC-3.07□□□□□ -2.9
VPS13AQ96RL7 AC010975.2-201ENST00000427781 588 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 MTND1P34-201ENST00000438556 671 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 RMST_5.1-201ENST00000618704 126 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 RNU6-596P-201ENST00000365395 98 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 MIR544A-201ENST00000384855 91 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 RNU6-1208P-201ENST00000459588 107 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 RNU6-202P-201ENST00000515998 96 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 RNU7-10P-201ENST00000607194 63 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 Y_RNA.342-201ENST00000365352 113 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 USP9YP30-201ENST00000430729 455 ntBASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-3.08□□□□□ -2.9
VPS13AQ96RL7 MIR3920-201ENST00000581751 86 ntBASIC-3.09□□□□□ -2.9
VPS13AQ96RL7 AP000542.1-201ENST00000448473 371 ntBASIC-3.09□□□□□ -2.9
VPS13AQ96RL7 RNU6-971P-201ENST00000516920 106 ntBASIC-3.09□□□□□ -2.9
VPS13AQ96RL7 MIR23C-201ENST00000579846 100 ntBASIC-3.09□□□□□ -2.9
VPS13AQ96RL7 MIR4438-201ENST00000585271 93 ntBASIC-3.09□□□□□ -2.9
VPS13AQ96RL7 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC-3.09□□□□□ -2.9
VPS13AQ96RL7 AC113618.1-201ENST00000416747 285 ntBASIC-3.1□□□□□ -2.91
VPS13AQ96RL7 RNU7-57P-201ENST00000459540 60 ntBASIC-3.1□□□□□ -2.91
VPS13AQ96RL7 MIR582-201ENST00000365731 98 ntBASIC-3.1□□□□□ -2.91
VPS13AQ96RL7 RNU6-444P-201ENST00000383988 108 ntBASIC-3.1□□□□□ -2.91
VPS13AQ96RL7 AC091178.2-201ENST00000584401 117 ntBASIC-3.1□□□□□ -2.91
VPS13AQ96RL7 AC009159.2-201ENST00000617603 606 ntBASIC-3.1□□□□□ -2.91
VPS13AQ96RL7 RNU6-1339P-201ENST00000363574 91 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 RNU6-921P-201ENST00000384361 107 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 MIR548AG2-201ENST00000581228 64 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 RNU6-847P-201ENST00000411115 108 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 AC096949.1-201ENST00000412047 152 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 AC097635.1-201ENST00000450678 155 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 Y_RNA.698-201ENST00000516798 118 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 AL121757.2-201ENST00000611223 313 ntBASIC-3.11□□□□□ -2.91
VPS13AQ96RL7 RNU6-949P-201ENST00000384040 107 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 RNU6-861P-201ENST00000516745 106 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 RNU6-774P-201ENST00000363238 107 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 AC090616.2-202ENST00000584248 222 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 AL450270.1-201ENST00000606160 391 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 RNU4-50P-201ENST00000364361 141 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 RNU6-522P-201ENST00000364497 107 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 Y_RNA.652-201ENST00000458902 102 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 AL358944.1-201ENST00000528537 144 ntBASIC-3.12□□□□□ -2.91
VPS13AQ96RL7 SNORD56.1-201ENST00000362913 68 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 RNU6-336P-201ENST00000364891 107 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 SNORA72.3-201ENST00000365074 132 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 RNU6-1286P-201ENST00000383871 107 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 UBE2V1P11-201ENST00000411559 285 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 RNU7-67P-201ENST00000459003 62 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 SNORA31.19-201ENST00000517079 126 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 Six3os1_7.1-201ENST00000621512 201 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 RNU6-961P-201ENST00000363893 105 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 RNU6-324P-201ENST00000363957 106 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 SNORD65-201ENST00000391079 73 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 MIR1303-201ENST00000408625 86 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 RNU6-341P-201ENST00000516973 96 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 snoZ196.1-201ENST00000625269 89 ntBASIC-3.13□□□□□ -2.91
VPS13AQ96RL7 Y_RNA.158-201ENST00000363651 101 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 RNU6-831P-201ENST00000384548 107 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 AC104629.1-201ENST00000494226 508 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 RNA5SP133-201ENST00000363368 119 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 SNORD115-8-201ENST00000363856 82 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 AC002542.1-201ENST00000440683 193 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 AP001836.1-201ENST00000604675 523 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 RNU4-58P-201ENST00000363192 141 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 AL008718.3-201ENST00000610217 321 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 AC096586.1-201ENST00000610267 561 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 FAS-AS1.1-201ENST00000615327 126 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 AC099654.9-201ENST00000637055 678 ntBASIC-3.14□□□□□ -2.91
VPS13AQ96RL7 SNORD115-39-201ENST00000363694 82 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 RNU6-1308P-201ENST00000516817 103 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 AC009878.1-201ENST00000621819 340 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 Y_RNA.110-201ENST00000363220 99 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 MIR548E-201ENST00000408287 88 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 RNU2-14P-201ENST00000411053 191 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 HSPE1P25-201ENST00000455484 251 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 MIR5006-201ENST00000583027 110 ntBASIC-3.15□□□□□ -2.91
VPS13AQ96RL7 U8.22-201ENST00000459141 133 ntBASIC-3.16□□□□□ -2.91
VPS13AQ96RL7 RNU6-221P-201ENST00000459541 99 ntBASIC-3.16□□□□□ -2.91
VPS13AQ96RL7 U7.5-201ENST00000517224 61 ntBASIC-3.16□□□□□ -2.91
VPS13AQ96RL7 RNU6-828P-201ENST00000364876 107 ntBASIC-3.16□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms