Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 RN7SKP220-201ENST00000410611 288 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 RNA5SP508-201ENST00000411327 119 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 SRIP3-201ENST00000413200 219 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 EEF1A1P41-201ENST00000414667 207 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 RNU7-34P-201ENST00000459394 64 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 SNORA64.4-201ENST00000516632 81 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 RNU6-90P-201ENST00000606352 106 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 SNORD3E-202ENST00000627253 216 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 MIR7153-201ENST00000637758 57 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 AC005336.3-201ENST00000623833 2679 ntBASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX2-3Q8TAU0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 PWAR6-201ENST00000552334 4618 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 SNORA68.1-201ENST00000364537 132 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 SNORA70.7-201ENST00000384159 133 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 MIR548G-201ENST00000408442 89 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 MIR1265-201ENST00000408444 86 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 AL161788.1-201ENST00000441805 169 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 RPS29P28-201ENST00000446439 141 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 RN7SL297P-201ENST00000483161 293 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 SNORA25.13-201ENST00000516395 103 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 DNAJC19P9-201ENST00000555084 351 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 AL513043.2-201ENST00000573941 143 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 AC027279.3-201ENST00000625055 122 ntBASIC3.61□□□□□ -1.83
NKX2-3Q8TAU0 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX2-3Q8TAU0 CST2P1-201ENST00000425770 87 ntBASIC3.6□□□□□ -1.83
NKX2-3Q8TAU0 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX2-3Q8TAU0 RN7SL636P-201ENST00000497504 294 ntBASIC3.6□□□□□ -1.83
NKX2-3Q8TAU0 RNU6-557P-201ENST00000516842 110 ntBASIC3.6□□□□□ -1.83
NKX2-3Q8TAU0 MIR5739-201ENST00000619803 80 ntBASIC3.6□□□□□ -1.83
NKX2-3Q8TAU0 Y_RNA.788-201ENST00000622394 112 ntBASIC3.6□□□□□ -1.83
NKX2-3Q8TAU0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 SNORA1.2-201ENST00000365189 134 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 SNORA32-201ENST00000384072 121 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 RNU6-411P-201ENST00000384451 107 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 MIR1236-201ENST00000408340 102 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 RNU2-48P-201ENST00000410694 191 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 RNU1-98P-201ENST00000458992 160 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 TRBV12-1-201ENST00000479785 344 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 RNU7-53P-201ENST00000516705 60 ntBASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NKX2-3Q8TAU0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
NKX2-3Q8TAU0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 AC007536.1-201ENST00000533382 349 ntBASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 MIR4319-201ENST00000577285 85 ntBASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 MIR6717-201ENST00000622747 73 ntBASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 MAPK10-362ENST00000641864 4484 ntBASIC3.58□□□□□ -1.84
NKX2-3Q8TAU0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 RNU4-32P-201ENST00000363404 141 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 Y_RNA.173-201ENST00000363776 113 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 SNORD15B-201ENST00000384714 146 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 MIR34C-201ENST00000384831 77 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 MIR206-201ENST00000384872 86 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 RNU6-380P-201ENST00000410207 107 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 RNA5SP293-201ENST00000410527 113 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 RN7SKP192-201ENST00000411291 327 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 AC015922.2-201ENST00000435593 184 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 ATP5J2P3-201ENST00000451550 258 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 CYP2C59P-201ENST00000457790 269 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 RNU6-917P-201ENST00000516294 104 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 AC096644.4-201ENST00000563417 2912 ntBASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
NKX2-3Q8TAU0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 MIR22-201ENST00000362190 85 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 RNU6-480P-201ENST00000384332 107 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 AL139132.1-201ENST00000431587 344 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 AC105272.1-201ENST00000438604 198 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 RNA5SP217-201ENST00000515959 91 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 RNU6-826P-201ENST00000516827 104 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 RNU7-181P-201ENST00000517234 74 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 MIR7515-201ENST00000637837 67 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 AC009487.2-201ENST00000420969 6821 ntBASIC3.56□□□□□ -1.84
NKX2-3Q8TAU0 MIR148B-201ENST00000362252 99 ntBASIC3.55□□□□□ -1.84
NKX2-3Q8TAU0 RNU6-163P-201ENST00000384396 106 ntBASIC3.55□□□□□ -1.84
NKX2-3Q8TAU0 RNU6-987P-201ENST00000384759 104 ntBASIC3.55□□□□□ -1.84
NKX2-3Q8TAU0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms