Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-717P-201ENST00000459076 104 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 AC025033.1-201ENST00000463883 194 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 RNU1-40P-201ENST00000516816 164 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 RNU1-97P-201ENST00000516872 164 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 AC010332.2-201ENST00000613083 1904 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-257P-201ENST00000410238 98 ntBASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 AC090142.3-201ENST00000519012 385 ntBASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 MIR6895-201ENST00000613497 78 ntBASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 AL513423.1-201ENST00000621695 132 ntBASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 AC132825.6-201ENST00000638861 357 ntBASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 ICE2P2-201ENST00000483823 2787 ntBASIC2.18□□□□□ -2.06
PCIF1Q9H4Z3 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-833P-201ENST00000363486 107 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 SNORA19-201ENST00000384737 128 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 Y_RNA.586-201ENST00000391146 98 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 MIR891A-201ENST00000401237 79 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 PGBD4P5-201ENST00000445958 426 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 AC093850.1-201ENST00000454121 251 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 snoU13.26-201ENST00000459452 105 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 RNU7-12P-201ENST00000516030 62 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 IGLV3-17-201ENST00000519099 244 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 MIR5694-201ENST00000581190 76 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 AC091895.1-201ENST00000624494 256 ntBASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
PCIF1Q9H4Z3 SNORA6-201ENST00000384033 151 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 Y_RNA.542-201ENST00000384641 111 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 Y_RNA.547-201ENST00000384654 119 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 MIR624-201ENST00000385217 97 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 MIR660-201ENST00000385235 97 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 RNA5SP127-201ENST00000411051 133 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 snoU13.15-201ENST00000459407 104 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 AC090255.1-201ENST00000495779 349 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 AC015726.2-201ENST00000620112 122 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 U2.22-201ENST00000636441 106 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 AL442644.1-201ENST00000454390 3105 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 AC092881.1-201ENST00000638218 2733 ntBASIC2.16□□□□□ -2.06
PCIF1Q9H4Z3 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-203P-201ENST00000384038 104 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-439P-201ENST00000384188 106 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 MIR504-201ENST00000385065 83 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-360P-201ENST00000390944 104 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 Y_RNA.584-201ENST00000391090 114 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 RNA5SP338-201ENST00000410495 85 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 MTND4LP9-201ENST00000427694 174 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 SNORA18.4-201ENST00000516440 124 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 MIR4778-201ENST00000577635 80 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
PCIF1Q9H4Z3 SNORD77.3-201ENST00000391113 65 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 AF228730.3-201ENST00000436691 102 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 AC121758.2-201ENST00000553271 193 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 AC022254.1-201ENST00000567857 235 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 MIR4287-201ENST00000579398 78 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 AC131055.1-201ENST00000584626 316 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 MIR376A2-201ENST00000636782 80 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
PCIF1Q9H4Z3 AC008555.8-201ENST00000623602 2168 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 MIR424-201ENST00000362227 98 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 Y_RNA.52-201ENST00000362760 96 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-81P-201ENST00000365608 104 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-1292P-201ENST00000383856 107 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 SNORD38C-201ENST00000384381 69 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 SNORA40-201ENST00000388090 126 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 RNA5SP212-201ENST00000391223 107 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 AC244636.1-201ENST00000421152 228 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 AC015922.2-201ENST00000435593 184 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 AL773524.1-201ENST00000614065 229 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 SNORD3E-202ENST00000627253 216 ntBASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.13□□□□□ -2.07
PCIF1Q9H4Z3 U8.1-201ENST00000362843 134 ntBASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 SNORD115-28-201ENST00000363931 81 ntBASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 SNORD113-1-201ENST00000365321 69 ntBASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 MIR516B2-201ENST00000385190 85 ntBASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 RNU2-60P-201ENST00000517290 128 ntBASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 AC095038.3-201ENST00000634439 195 ntBASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.12□□□□□ -2.07
PCIF1Q9H4Z3 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-915P-201ENST00000364943 103 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 RNA5SP138-201ENST00000365098 114 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 RNA5SP37-201ENST00000365420 130 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 MIR194-1-201ENST00000384892 85 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 MIR526A1-201ENST00000384897 85 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 RNU4-57P-201ENST00000515980 135 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 Y_RNA.686-201ENST00000516548 134 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 AP001328.1-201ENST00000528550 176 ntBASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 MIR4299-201ENST00000577899 72 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms