Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 RNU1-91P-201ENST00000364746 163 ntBASIC3.4□□□□□ -1.87
USP46P62068 SNORA48.8-201ENST00000391324 134 ntBASIC3.4□□□□□ -1.87
USP46P62068 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.4□□□□□ -1.87
USP46P62068 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.4□□□□□ -1.87
USP46P62068 BX510359.4-201ENST00000423750 193 ntBASIC3.4□□□□□ -1.87
USP46P62068 AC069257.2-201ENST00000441819 155 ntBASIC3.4□□□□□ -1.87
USP46P62068 RNA5SP367-201ENST00000516557 118 ntBASIC3.4□□□□□ -1.87
USP46P62068 AC096720.1-201ENST00000604441 183 ntBASIC3.4□□□□□ -1.87
USP46P62068 MIR4791-201ENST00000607666 84 ntBASIC3.4□□□□□ -1.87
USP46P62068 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP46P62068 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USP46P62068 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
USP46P62068 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.4□□□□□ -1.87
USP46P62068 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
USP46P62068 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USP46P62068 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USP46P62068 SNORD115-2-201ENST00000362842 82 ntBASIC3.39□□□□□ -1.87
USP46P62068 SNORD115-20-201ENST00000365099 82 ntBASIC3.39□□□□□ -1.87
USP46P62068 Y_RNA.377-201ENST00000365644 108 ntBASIC3.39□□□□□ -1.87
USP46P62068 MIR452-201ENST00000385020 85 ntBASIC3.39□□□□□ -1.87
USP46P62068 RNU6-887P-201ENST00000410660 100 ntBASIC3.39□□□□□ -1.87
USP46P62068 RNU4-47P-201ENST00000410876 114 ntBASIC3.39□□□□□ -1.87
USP46P62068 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.39□□□□□ -1.87
USP46P62068 SNORA64.4-201ENST00000516632 81 ntBASIC3.39□□□□□ -1.87
USP46P62068 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.39□□□□□ -1.87
USP46P62068 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
USP46P62068 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.39□□□□□ -1.87
USP46P62068 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
USP46P62068 SNORD115-35-201ENST00000365122 82 ntBASIC3.38□□□□□ -1.87
USP46P62068 RNU6-950P-201ENST00000384651 107 ntBASIC3.38□□□□□ -1.87
USP46P62068 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
USP46P62068 RNA5SP261-201ENST00000410536 106 ntBASIC3.38□□□□□ -1.87
USP46P62068 RPS29P29-201ENST00000456396 171 ntBASIC3.38□□□□□ -1.87
USP46P62068 RN7SL863P-201ENST00000462370 296 ntBASIC3.38□□□□□ -1.87
USP46P62068 RNA5SP385-201ENST00000515947 110 ntBASIC3.38□□□□□ -1.87
USP46P62068 RNU6-1018P-201ENST00000516577 106 ntBASIC3.38□□□□□ -1.87
USP46P62068 AL449363.1-201ENST00000617815 186 ntBASIC3.38□□□□□ -1.87
USP46P62068 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.38□□□□□ -1.87
USP46P62068 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP46P62068 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.38□□□□□ -1.87
USP46P62068 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP46P62068 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
USP46P62068 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP46P62068 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP46P62068 RNU6-675P-201ENST00000384236 104 ntBASIC3.37□□□□□ -1.87
USP46P62068 MIR136-201ENST00000385207 82 ntBASIC3.37□□□□□ -1.87
USP46P62068 MIR29C-201ENST00000385231 88 ntBASIC3.37□□□□□ -1.87
USP46P62068 RNU6-1190P-201ENST00000410811 104 ntBASIC3.37□□□□□ -1.87
USP46P62068 AC093850.1-201ENST00000454121 251 ntBASIC3.37□□□□□ -1.87
USP46P62068 MIR1270-201ENST00000459320 83 ntBASIC3.37□□□□□ -1.87
USP46P62068 RNU6-267P-201ENST00000516714 103 ntBASIC3.37□□□□□ -1.87
USP46P62068 AC104027.1-201ENST00000521887 300 ntBASIC3.37□□□□□ -1.87
USP46P62068 AL355596.1-201ENST00000565399 3996 ntBASIC3.36□□□□□ -1.87
USP46P62068 SNORD56.3-201ENST00000363507 71 ntBASIC3.36□□□□□ -1.87
USP46P62068 MIR597-201ENST00000384968 97 ntBASIC3.36□□□□□ -1.87
USP46P62068 DNAJC19P9-201ENST00000555084 351 ntBASIC3.36□□□□□ -1.87
USP46P62068 MIR6841-201ENST00000637129 72 ntBASIC3.36□□□□□ -1.87
USP46P62068 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP46P62068 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
USP46P62068 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.36□□□□□ -1.87
USP46P62068 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP46P62068 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.35□□□□□ -1.87
USP46P62068 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
USP46P62068 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
USP46P62068 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
USP46P62068 RNA5SP383-201ENST00000362934 120 ntBASIC3.35□□□□□ -1.87
USP46P62068 SNORA1.1-201ENST00000364671 133 ntBASIC3.35□□□□□ -1.87
USP46P62068 RNU6-813P-201ENST00000384691 107 ntBASIC3.35□□□□□ -1.87
USP46P62068 RNU11-3P-201ENST00000391111 133 ntBASIC3.35□□□□□ -1.87
USP46P62068 MIR3126-201ENST00000577443 74 ntBASIC3.35□□□□□ -1.87
USP46P62068 UBL5P2-201ENST00000583788 219 ntBASIC3.35□□□□□ -1.87
USP46P62068 MIR4506-201ENST00000584693 77 ntBASIC3.35□□□□□ -1.87
USP46P62068 MIR6717-201ENST00000622747 73 ntBASIC3.35□□□□□ -1.87
USP46P62068 AL442644.1-201ENST00000454390 3105 ntBASIC3.35□□□□□ -1.87
USP46P62068 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USP46P62068 MIR627-201ENST00000384979 97 ntBASIC3.34□□□□□ -1.87
USP46P62068 SNORA26.6-201ENST00000391256 115 ntBASIC3.34□□□□□ -1.87
USP46P62068 CST9LP2-201ENST00000437612 320 ntBASIC3.34□□□□□ -1.87
USP46P62068 AC104389.3-201ENST00000445629 235 ntBASIC3.34□□□□□ -1.87
USP46P62068 HMGN1P18-201ENST00000457642 277 ntBASIC3.34□□□□□ -1.87
USP46P62068 AC245166.1-201ENST00000521012 253 ntBASIC3.34□□□□□ -1.87
USP46P62068 MIR5588-201ENST00000581890 63 ntBASIC3.34□□□□□ -1.87
USP46P62068 MIR4325-201ENST00000583049 90 ntBASIC3.34□□□□□ -1.87
USP46P62068 AC243994.1-201ENST00000618627 109 ntBASIC3.34□□□□□ -1.87
USP46P62068 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.33□□□□□ -1.88
USP46P62068 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.33□□□□□ -1.88
USP46P62068 RNU6-1313P-201ENST00000362622 102 ntBASIC3.33□□□□□ -1.88
USP46P62068 RNU6-1125P-201ENST00000363601 107 ntBASIC3.33□□□□□ -1.88
USP46P62068 Y_RNA.244-201ENST00000364484 109 ntBASIC3.33□□□□□ -1.88
USP46P62068 SNORA7.4-201ENST00000384249 137 ntBASIC3.33□□□□□ -1.88
USP46P62068 RNU6-1031P-201ENST00000384773 107 ntBASIC3.33□□□□□ -1.88
USP46P62068 RNU2-40P-201ENST00000410833 196 ntBASIC3.33□□□□□ -1.88
USP46P62068 AC108729.3-201ENST00000513484 108 ntBASIC3.33□□□□□ -1.88
USP46P62068 RNA5SP341-201ENST00000516261 117 ntBASIC3.33□□□□□ -1.88
USP46P62068 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.33□□□□□ -1.88
USP46P62068 MIR376B-201ENST00000614515 100 ntBASIC3.33□□□□□ -1.88
USP46P62068 AC073476.4-201ENST00000628409 72 ntBASIC3.33□□□□□ -1.88
USP46P62068 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP46P62068 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.33□□□□□ -1.88
USP46P62068 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms