Protein–RNA interactions for Protein: P16070

CD44, CD44 antigen, humanhuman

Known RBP Predictions only

Length 742 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD44P16070 AC087499.8-201ENST00000578406 226 ntBASIC4.09□□□□□ -1.75
CD44P16070 MIR5089-201ENST00000580047 84 ntBASIC4.09□□□□□ -1.75
CD44P16070 DLEU2_3.2-201ENST00000612883 73 ntBASIC4.09□□□□□ -1.75
CD44P16070 MIR6875-201ENST00000617506 72 ntBASIC4.09□□□□□ -1.75
CD44P16070 SNORD38B-202ENST00000625943 69 ntBASIC4.09□□□□□ -1.75
CD44P16070 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
CD44P16070 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC4.08□□□□□ -1.76
CD44P16070 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CD44P16070 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CD44P16070 RNA5SP493-201ENST00000364115 91 ntBASIC4.08□□□□□ -1.76
CD44P16070 RNU6-1335P-201ENST00000365426 107 ntBASIC4.08□□□□□ -1.76
CD44P16070 Y_RNA.510-201ENST00000384511 114 ntBASIC4.08□□□□□ -1.76
CD44P16070 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CD44P16070 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CD44P16070 MIR708-201ENST00000390708 88 ntBASIC4.08□□□□□ -1.76
CD44P16070 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CD44P16070 SNORA3.3-201ENST00000408712 125 ntBASIC4.08□□□□□ -1.76
CD44P16070 EIF4BP1-201ENST00000554881 351 ntBASIC4.08□□□□□ -1.76
CD44P16070 UBL5P2-201ENST00000583788 219 ntBASIC4.08□□□□□ -1.76
CD44P16070 AC006111.3-201ENST00000622137 383 ntBASIC4.08□□□□□ -1.76
CD44P16070 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CD44P16070 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
CD44P16070 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CD44P16070 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CD44P16070 MIR423-201ENST00000362201 94 ntBASIC4.07□□□□□ -1.76
CD44P16070 Y_RNA.239-201ENST00000364444 113 ntBASIC4.07□□□□□ -1.76
CD44P16070 SNORA24B-201ENST00000384176 131 ntBASIC4.07□□□□□ -1.76
CD44P16070 MIR561-201ENST00000385216 97 ntBASIC4.07□□□□□ -1.76
CD44P16070 RNU6-1077P-201ENST00000410506 102 ntBASIC4.07□□□□□ -1.76
CD44P16070 RNA5SP164-201ENST00000516533 110 ntBASIC4.07□□□□□ -1.76
CD44P16070 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CD44P16070 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CD44P16070 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CD44P16070 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CD44P16070 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CD44P16070 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CD44P16070 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
CD44P16070 AC010300.1-201ENST00000600671 5134 ntBASIC4.06□□□□□ -1.76
CD44P16070 SNORA62-201ENST00000365493 153 ntBASIC4.06□□□□□ -1.76
CD44P16070 AC019129.1-201ENST00000403786 261 ntBASIC4.06□□□□□ -1.76
CD44P16070 RPS27P16-201ENST00000425758 201 ntBASIC4.06□□□□□ -1.76
CD44P16070 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.06□□□□□ -1.76
CD44P16070 UCA1.1-201ENST00000620952 75 ntBASIC4.06□□□□□ -1.76
CD44P16070 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CD44P16070 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CD44P16070 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CD44P16070 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
CD44P16070 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.05□□□□□ -1.76
CD44P16070 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.05□□□□□ -1.76
CD44P16070 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CD44P16070 Y_RNA.375-201ENST00000365625 101 ntBASIC4.05□□□□□ -1.76
CD44P16070 Y_RNA.379-201ENST00000365653 102 ntBASIC4.05□□□□□ -1.76
CD44P16070 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CD44P16070 Z98941.1-201ENST00000407764 100 ntBASIC4.05□□□□□ -1.76
CD44P16070 RHEBP3-201ENST00000411920 351 ntBASIC4.05□□□□□ -1.76
CD44P16070 SNORA70.19-201ENST00000516717 90 ntBASIC4.05□□□□□ -1.76
CD44P16070 MIR3169-201ENST00000578032 83 ntBASIC4.05□□□□□ -1.76
CD44P16070 AL355297.2-201ENST00000604792 129 ntBASIC4.05□□□□□ -1.76
CD44P16070 ZYXP1-201ENST00000617638 118 ntBASIC4.05□□□□□ -1.76
CD44P16070 AC008133.2-201ENST00000624540 351 ntBASIC4.05□□□□□ -1.76
CD44P16070 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CD44P16070 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
CD44P16070 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CD44P16070 AL596028.1-201ENST00000326971 197 ntBASIC4.04□□□□□ -1.76
CD44P16070 RNU6-982P-201ENST00000516216 102 ntBASIC4.04□□□□□ -1.76
CD44P16070 CYCSP30-201ENST00000546447 172 ntBASIC4.04□□□□□ -1.76
CD44P16070 MIR548AO-201ENST00000579992 96 ntBASIC4.04□□□□□ -1.76
CD44P16070 AC022513.1-201ENST00000624512 117 ntBASIC4.04□□□□□ -1.76
CD44P16070 AP000553.6-201ENST00000641242 118 ntBASIC4.04□□□□□ -1.76
CD44P16070 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
CD44P16070 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.03□□□□□ -1.76
CD44P16070 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CD44P16070 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CD44P16070 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CD44P16070 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CD44P16070 RNU6-950P-201ENST00000384651 107 ntBASIC4.03□□□□□ -1.76
CD44P16070 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.03□□□□□ -1.76
CD44P16070 RNU6ATAC42P-201ENST00000408637 95 ntBASIC4.03□□□□□ -1.76
CD44P16070 AC023632.4-201ENST00000517783 191 ntBASIC4.03□□□□□ -1.76
CD44P16070 AC007179.3-201ENST00000604976 235 ntBASIC4.03□□□□□ -1.76
CD44P16070 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CD44P16070 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CD44P16070 SNORA16B-201ENST00000364674 135 ntBASIC4.02□□□□□ -1.77
CD44P16070 SNORA26.7-201ENST00000391288 122 ntBASIC4.02□□□□□ -1.77
CD44P16070 SNORD63B-201ENST00000411005 70 ntBASIC4.02□□□□□ -1.77
CD44P16070 AC017083.1-201ENST00000428093 483 ntBASIC4.02□□□□□ -1.77
CD44P16070 RNU6-1194P-201ENST00000516208 104 ntBASIC4.02□□□□□ -1.77
CD44P16070 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CD44P16070 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CD44P16070 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CD44P16070 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CD44P16070 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.01□□□□□ -1.77
CD44P16070 RNU6-1031P-201ENST00000384773 107 ntBASIC4.01□□□□□ -1.77
CD44P16070 RN7SKP177-201ENST00000410567 355 ntBASIC4.01□□□□□ -1.77
CD44P16070 RPS29P7-201ENST00000439662 171 ntBASIC4.01□□□□□ -1.77
CD44P16070 MIR5187-201ENST00000583479 76 ntBASIC4.01□□□□□ -1.77
CD44P16070 DLEU2_3.1-201ENST00000620005 73 ntBASIC4.01□□□□□ -1.77
CD44P16070 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CD44P16070 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CD44P16070 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms