Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MIR4713-201ENST00000582691 75 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 AL049861.1-201ENST00000603130 150 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 AC108706.1-201ENST00000611053 297 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.182-201ENST00000363880 111 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-312P-201ENST00000364629 107 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-275P-201ENST00000364910 107 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 AL356379.1-201ENST00000414105 126 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 MLLT10P1-201ENST00000418346 262 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 AC099513.1-201ENST00000490423 301 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 AC021506.2-201ENST00000612354 169 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 AC027279.3-201ENST00000625055 122 ntBASIC2.01□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-661P-201ENST00000362409 107 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-424P-201ENST00000384367 105 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.555-201ENST00000384673 110 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 RNU2-40P-201ENST00000410833 196 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 SNRPGP8-201ENST00000454064 226 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 RNA5SP233-201ENST00000459153 113 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 RNU7-34P-201ENST00000459394 64 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-1219P-201ENST00000516143 112 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-126P-201ENST00000516685 103 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-861P-201ENST00000516745 106 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 AC109810.1-201ENST00000534066 224 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 MIR4662B-201ENST00000579498 81 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 MIR3683-201ENST00000580847 82 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 AC008507.4-201ENST00000585464 127 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 AL513423.1-201ENST00000621695 132 ntBASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.23-201ENST00000362496 106 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.140-201ENST00000363474 103 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 RNA5SP190-201ENST00000365222 118 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-728P-201ENST00000365375 104 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.412-201ENST00000384001 104 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 RNU4-43P-201ENST00000410628 137 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 RNA5SP458-201ENST00000516188 119 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 RNA5SP168-201ENST00000516642 112 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 RNU7-149P-201ENST00000516739 59 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 MIR4448-201ENST00000584360 86 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
PCDHA1Q9Y5I3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 SNORD50B-201ENST00000364995 70 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 snoU2-30.1-201ENST00000365012 70 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-886P-201ENST00000384319 105 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 MT-TR-201ENST00000387439 65 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 U8.16-201ENST00000391279 133 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 CALM2P4-201ENST00000430810 426 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 AL603825.1-201ENST00000438481 80 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 PGBD4P5-201ENST00000445958 426 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 CYCTP-201ENST00000504253 315 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.662-201ENST00000516028 97 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 SNORD45.4-201ENST00000516629 73 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 AL160236.1-201ENST00000556317 195 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 AC120024.3-201ENST00000603167 156 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 AL627230.6-201ENST00000611129 280 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.98□□□□□ -2.09
PCDHA1Q9Y5I3 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-1084P-201ENST00000362498 107 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-833P-201ENST00000363486 107 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.270-201ENST00000364693 104 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-484P-201ENST00000384016 107 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 MIR194-1-201ENST00000384892 85 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 MIR548I3-201ENST00000408378 149 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 MIR548I1-201ENST00000408810 149 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 HMGN2P19-201ENST00000425149 265 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-1299P-201ENST00000516316 100 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 Pinc.1-201ENST00000616452 154 ntBASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.97□□□□□ -2.09
PCDHA1Q9Y5I3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.96□□□□□ -2.09
PCDHA1Q9Y5I3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 MIR424-201ENST00000362227 98 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-1123P-201ENST00000362347 106 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.180-201ENST00000363867 113 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.336-201ENST00000365307 109 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 PCNPP3-201ENST00000393579 471 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 AL161935.2-201ENST00000414627 60 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 JTBP1-201ENST00000441314 247 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 AL121914.1-201ENST00000450188 156 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 SNORD13-201ENST00000459299 104 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 AC005840.1-201ENST00000498412 377 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 MRPS17P9-201ENST00000511924 393 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-561P-201ENST00000516222 102 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 RNA5SP153-201ENST00000516498 76 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 RNA5SP364-201ENST00000516938 78 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 MIR4255-201ENST00000579351 72 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 MIR3618-201ENST00000580330 88 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 MIR502-201ENST00000606349 86 ntBASIC1.96□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-414P-201ENST00000363705 104 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 137.9 ms