Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNU11-201ENST00000387069 134 ntBASIC6.12□□□□□ -1.43
SENP3Q9H4L4 ABCF2P2-201ENST00000450549 296 ntBASIC6.12□□□□□ -1.43
SENP3Q9H4L4 HMGN2P7-201ENST00000456186 273 ntBASIC6.12□□□□□ -1.43
SENP3Q9H4L4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
SENP3Q9H4L4 NAMPTP3-201ENST00000569273 224 ntBASIC6.12□□□□□ -1.43
SENP3Q9H4L4 AL360012.1-201ENST00000602813 131 ntBASIC6.12□□□□□ -1.43
SENP3Q9H4L4 MIR6852-201ENST00000621699 66 ntBASIC6.12□□□□□ -1.43
SENP3Q9H4L4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SENP3Q9H4L4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SENP3Q9H4L4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
SENP3Q9H4L4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SENP3Q9H4L4 MIR4709-201ENST00000577272 72 ntBASIC6.11□□□□□ -1.43
SENP3Q9H4L4 MIR3657-201ENST00000584818 117 ntBASIC6.11□□□□□ -1.43
SENP3Q9H4L4 AC013244.2-201ENST00000603396 103 ntBASIC6.11□□□□□ -1.43
SENP3Q9H4L4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC6.11□□□□□ -1.43
SENP3Q9H4L4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SENP3Q9H4L4 MAPK10-253ENST00000641010 4072 ntBASIC6.1□□□□□ -1.43
SENP3Q9H4L4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3Q9H4L4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3Q9H4L4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3Q9H4L4 RNU6-403P-201ENST00000363163 104 ntBASIC6.1□□□□□ -1.43
SENP3Q9H4L4 RNA5SP151-201ENST00000365632 117 ntBASIC6.1□□□□□ -1.43
SENP3Q9H4L4 AC097635.1-201ENST00000450678 155 ntBASIC6.1□□□□□ -1.43
SENP3Q9H4L4 IFITM8P-201ENST00000522529 394 ntBASIC6.1□□□□□ -1.43
SENP3Q9H4L4 Xist_exon1.1-201ENST00000618930 85 ntBASIC6.1□□□□□ -1.43
SENP3Q9H4L4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC6.1□□□□□ -1.43
SENP3Q9H4L4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3Q9H4L4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
SENP3Q9H4L4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3Q9H4L4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC6.09□□□□□ -1.43
SENP3Q9H4L4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3Q9H4L4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3Q9H4L4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC6.09□□□□□ -1.43
SENP3Q9H4L4 AC104333.2-201ENST00000422630 192 ntBASIC6.09□□□□□ -1.43
SENP3Q9H4L4 RNU6-656P-201ENST00000516785 107 ntBASIC6.09□□□□□ -1.43
SENP3Q9H4L4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3Q9H4L4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
SENP3Q9H4L4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
SENP3Q9H4L4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 RNVU1-14-201ENST00000384770 164 ntBASIC6.08□□□□□ -1.44
SENP3Q9H4L4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC6.08□□□□□ -1.44
SENP3Q9H4L4 LINC00901.1-201ENST00000617252 152 ntBASIC6.08□□□□□ -1.44
SENP3Q9H4L4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC6.08□□□□□ -1.44
SENP3Q9H4L4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SENP3Q9H4L4 Z82217.1-201ENST00000625157 8149 ntBASIC6.07□□□□□ -1.44
SENP3Q9H4L4 IPO8P1-201ENST00000455509 3109 ntBASIC6.07□□□□□ -1.44
SENP3Q9H4L4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SENP3Q9H4L4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SENP3Q9H4L4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SENP3Q9H4L4 Y_RNA.56-201ENST00000362798 112 ntBASIC6.07□□□□□ -1.44
SENP3Q9H4L4 Y_RNA.224-201ENST00000364308 111 ntBASIC6.07□□□□□ -1.44
SENP3Q9H4L4 SNORA48.2-201ENST00000390926 124 ntBASIC6.07□□□□□ -1.44
SENP3Q9H4L4 SNORD93-201ENST00000408813 74 ntBASIC6.07□□□□□ -1.44
SENP3Q9H4L4 AC099513.1-201ENST00000490423 301 ntBASIC6.07□□□□□ -1.44
SENP3Q9H4L4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SENP3Q9H4L4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SENP3Q9H4L4 RNU6-495P-201ENST00000362995 107 ntBASIC6.06□□□□□ -1.44
SENP3Q9H4L4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC6.06□□□□□ -1.44
SENP3Q9H4L4 RNU7-62P-201ENST00000458856 62 ntBASIC6.06□□□□□ -1.44
SENP3Q9H4L4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC6.06□□□□□ -1.44
SENP3Q9H4L4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC6.06□□□□□ -1.44
SENP3Q9H4L4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SENP3Q9H4L4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC6.05□□□□□ -1.44
SENP3Q9H4L4 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SENP3Q9H4L4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC6.04□□□□□ -1.44
SENP3Q9H4L4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC6.04□□□□□ -1.44
SENP3Q9H4L4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC6.04□□□□□ -1.44
SENP3Q9H4L4 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SENP3Q9H4L4 MIR424-201ENST00000362227 98 ntBASIC6.04□□□□□ -1.44
SENP3Q9H4L4 RNU6-838P-201ENST00000363399 108 ntBASIC6.04□□□□□ -1.44
SENP3Q9H4L4 HIST1H2APS3-201ENST00000403259 134 ntBASIC6.04□□□□□ -1.44
SENP3Q9H4L4 RNU2-37P-201ENST00000410695 177 ntBASIC6.04□□□□□ -1.44
SENP3Q9H4L4 GNG5P5-201ENST00000420444 220 ntBASIC6.04□□□□□ -1.44
SENP3Q9H4L4 RNU6-1265P-201ENST00000516342 103 ntBASIC6.04□□□□□ -1.44
SENP3Q9H4L4 AC091178.1-203ENST00000584586 279 ntBASIC6.04□□□□□ -1.44
SENP3Q9H4L4 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SENP3Q9H4L4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC6.03□□□□□ -1.44
SENP3Q9H4L4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SENP3Q9H4L4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SENP3Q9H4L4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
SENP3Q9H4L4 AL359511.1-201ENST00000402970 211 ntBASIC6.03□□□□□ -1.44
SENP3Q9H4L4 RPS29P19-201ENST00000479709 171 ntBASIC6.03□□□□□ -1.44
SENP3Q9H4L4 MIR4264-201ENST00000583520 66 ntBASIC6.03□□□□□ -1.44
SENP3Q9H4L4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SENP3Q9H4L4 RNU1-58P-201ENST00000362413 163 ntBASIC6.02□□□□□ -1.45
SENP3Q9H4L4 MIR599-201ENST00000385069 95 ntBASIC6.02□□□□□ -1.45
SENP3Q9H4L4 AC026403.1-201ENST00000518938 295 ntBASIC6.02□□□□□ -1.45
SENP3Q9H4L4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SENP3Q9H4L4 RNU1-83P-201ENST00000363426 164 ntBASIC6.01□□□□□ -1.45
SENP3Q9H4L4 MIR128-1-201ENST00000384921 82 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 150.4 ms