Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 AC092427.1-202ENST00000430569 476 ntBASIC2.92□□□□□ -1.94
ZKSCAN3Q9BRR0 AC087499.4-201ENST00000448505 178 ntBASIC2.92□□□□□ -1.94
ZKSCAN3Q9BRR0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.92□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU1-58P-201ENST00000362413 163 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU4-82P-201ENST00000362443 140 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 SNORD115-3-201ENST00000363100 82 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.213-201ENST00000364178 111 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 RNA5SP109-201ENST00000391010 116 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU6-554P-201ENST00000410466 106 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 SNORD36C-201ENST00000516733 66 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 AC006254.2-201ENST00000603259 279 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 AC069114.2-201ENST00000604699 304 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 SNORA28-201ENST00000606769 126 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 U4.3-201ENST00000621047 82 ntBASIC2.91□□□□□ -1.94
ZKSCAN3Q9BRR0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU6-349P-201ENST00000362402 107 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU1-133P-201ENST00000364867 167 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.440-201ENST00000384120 114 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 RNY1P6-201ENST00000384193 109 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 STAG3L5P-204ENST00000443759 179 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 RNY4P20-201ENST00000516678 93 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 AP003484.1-201ENST00000530974 250 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 AC015726.2-201ENST00000620112 122 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 AC022513.1-201ENST00000624512 117 ntBASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
ZKSCAN3Q9BRR0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 RNA5SP289-201ENST00000362332 137 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.49-201ENST00000362714 112 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU6-1019P-201ENST00000364424 107 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 SNORD38C-201ENST00000384381 69 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 MIR759-201ENST00000390224 91 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU6-440P-201ENST00000390882 105 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 AL513328.1-201ENST00000446460 224 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU7-80P-201ENST00000459562 61 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.677-201ENST00000516401 85 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 AC021443.1-201ENST00000604478 211 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 AC009831.4-201ENST00000620744 325 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 MIR8054-201ENST00000620877 86 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 AC106754.2-201ENST00000623006 233 ntBASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
ZKSCAN3Q9BRR0 AL589743.1-201ENST00000551932 2712 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 RNY4P6-201ENST00000363667 96 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 RNA5SP456-201ENST00000364002 114 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 SNORD114-30-201ENST00000364448 72 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.549-201ENST00000384657 102 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU6-938P-201ENST00000411285 103 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 RNA5SP492-201ENST00000411330 114 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 AC069257.2-201ENST00000441819 155 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 UBBP3-201ENST00000445497 241 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 SNORA18.7-201ENST00000516910 131 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU6-537P-201ENST00000517277 103 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 MIR5092-201ENST00000583139 88 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
ZKSCAN3Q9BRR0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.163-201ENST00000363702 113 ntBASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.454-201ENST00000384224 113 ntBASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 AL359511.1-201ENST00000402970 211 ntBASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 MIR1302-5-201ENST00000408164 150 ntBASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 MIR4778-201ENST00000577635 80 ntBASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 AC027279.3-201ENST00000625055 122 ntBASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 MIR4679-1-201ENST00000637619 75 ntBASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
ZKSCAN3Q9BRR0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU6-766P-201ENST00000362478 107 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 SNORD56.5-201ENST00000364281 72 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.351-201ENST00000365436 96 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU6-163P-201ENST00000384396 106 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 SNORA67.4-201ENST00000384688 142 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 U8.17-201ENST00000391292 132 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 AL627390.1-201ENST00000396055 340 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 AC114811.1-201ENST00000507207 168 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 AC084364.2-201ENST00000546924 395 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 MIR3126-201ENST00000577443 74 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 AC046143.2-201ENST00000609789 160 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 AL035470.1-201ENST00000622571 220 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 Z82195.2-201ENST00000612348 18351 ntBASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
ZKSCAN3Q9BRR0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
ZKSCAN3Q9BRR0 SNORA63.5-201ENST00000363548 123 ntBASIC2.85□□□□□ -1.95
ZKSCAN3Q9BRR0 Y_RNA.298-201ENST00000364960 107 ntBASIC2.85□□□□□ -1.95
ZKSCAN3Q9BRR0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
ZKSCAN3Q9BRR0 SNORA72.7-201ENST00000516349 94 ntBASIC2.85□□□□□ -1.95
ZKSCAN3Q9BRR0 RNU6-94P-201ENST00000607728 107 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms