Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 AC084364.2-201ENST00000546924 395 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 MIR518A2-201ENST00000384966 87 ntBASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 RNA5SP465-201ENST00000391195 109 ntBASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 RNU6-1211P-201ENST00000459179 105 ntBASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 AC011603.4-201ENST00000611325 277 ntBASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 MIR1291-201ENST00000627649 87 ntBASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.56□□□□□ -2
NKX2-4Q9H2Z4 Y_RNA.251-201ENST00000364551 99 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 SNORA64-201ENST00000384674 134 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 RNA5SP482-201ENST00000391269 118 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 MIR1283-2-201ENST00000408621 87 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 RNU2-51P-201ENST00000410708 197 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 RNU7-28P-201ENST00000516759 62 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 AP000942.3-201ENST00000603702 160 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 AP001340.1-201ENST00000624405 217 ntBASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-4Q9H2Z4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 RNU6-1084P-201ENST00000362498 107 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 RNY1P11-201ENST00000363759 113 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 RNA5SP456-201ENST00000364002 114 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 HMGN2P39-201ENST00000398005 273 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 RNA5SP270-201ENST00000411361 118 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 RNU6-313P-201ENST00000516317 112 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 RNU6-479P-201ENST00000516348 105 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 SNORA18.4-201ENST00000516440 124 ntBASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NKX2-4Q9H2Z4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 Y_RNA.66-201ENST00000362862 102 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 U8.5-201ENST00000364528 136 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 RNU6-915P-201ENST00000364943 103 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 RNU6-440P-201ENST00000390882 105 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 RNU6-1154P-201ENST00000391001 104 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 AC131055.1-201ENST00000584626 316 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 MIR4762-201ENST00000585261 75 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 SNORA28-201ENST00000606769 126 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 U7.2-201ENST00000607576 63 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 MIR8054-201ENST00000620877 86 ntBASIC2.53□□□□□ -2
NKX2-4Q9H2Z4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.53□□□□□ -2.01
NKX2-4Q9H2Z4 AC016717.2-201ENST00000609089 5141 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD14E-201ENST00000364009 85 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 snoU2-30.1-201ENST00000365012 70 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 SNORA67.3-201ENST00000384366 140 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD88.1-201ENST00000408684 91 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 AC008267.6-201ENST00000441664 139 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 STAG3L5P-204ENST00000443759 179 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 RPL39P40-201ENST00000445481 146 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-1270P-201ENST00000517128 108 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 RNU1-104P-201ENST00000517280 175 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 AC007751.1-201ENST00000529260 376 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 AL161431.1-201ENST00000618966 4205 ntBASIC2.52□□□□□ -2.01
NKX2-4Q9H2Z4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD50B-201ENST00000364995 70 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD24-201ENST00000383884 75 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-442P-201ENST00000383968 104 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD61-201ENST00000384252 73 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 MIR1287-201ENST00000408492 90 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 RNA5SP127-201ENST00000411051 133 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 AC108729.3-201ENST00000513484 108 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 Y_RNA.666-201ENST00000516187 112 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 AL365205.2-201ENST00000594586 68 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD14A-201ENST00000606526 91 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 AL365222.1-201ENST00000614661 98 ntBASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
NKX2-4Q9H2Z4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD18B-201ENST00000365659 72 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 U8.9-201ENST00000365667 134 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 RNU1-109P-201ENST00000383960 147 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-950P-201ENST00000384651 107 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 SNRPGP13-201ENST00000442212 177 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-1053P-201ENST00000515930 101 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-693P-201ENST00000516134 107 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-295P-201ENST00000516901 104 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 MIR3129-201ENST00000581095 76 ntBASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
NKX2-4Q9H2Z4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 U8.1-201ENST00000362843 134 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 Y_RNA.71-201ENST00000362892 104 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-888P-201ENST00000363010 101 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 Y_RNA.218-201ENST00000364218 104 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 MIR624-201ENST00000385217 97 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-1168P-201ENST00000390831 104 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 215.6 ms