Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RNU6-268P-201ENST00000364174 107 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 Y_RNA.440-201ENST00000384120 114 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 SNORD116-22-201ENST00000384430 92 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 RNU6-795P-201ENST00000516323 103 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 RNU7-6P-201ENST00000516845 62 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 AP003484.1-201ENST00000530974 250 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 MIR3683-201ENST00000580847 82 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 U6.108-201ENST00000637764 58 ntBASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 Y_RNA.336-201ENST00000365307 109 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 MIR561-201ENST00000385216 97 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 AC087499.4-201ENST00000448505 178 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 ATP5J2P3-201ENST00000451550 258 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 RNU6-267P-201ENST00000516714 103 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 AC024995.1-201ENST00000523014 93 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 GTF3AP2-201ENST00000557014 266 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 MIR4694-201ENST00000578534 80 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 MIR3162-201ENST00000581818 82 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 MIR4762-201ENST00000585261 75 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
SH3RF1Q7Z6J0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 RNU6-832P-201ENST00000363319 107 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 U8.5-201ENST00000364528 136 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 SNORD115-35-201ENST00000365122 82 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 Y_RNA.507-201ENST00000384500 99 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 BTF3P4-201ENST00000418852 495 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 ARF4P2-201ENST00000430209 526 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 AC113410.1-201ENST00000505029 247 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 AC023141.11-201ENST00000508864 202 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 SNORD45.4-201ENST00000516629 73 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 uc_338.25-201ENST00000613756 156 ntBASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SH3RF1Q7Z6J0 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 SNORA54-201ENST00000384281 123 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 Y_RNA.531-201ENST00000384589 121 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 MIR577-201ENST00000385196 96 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 AL627390.1-201ENST00000396055 340 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 RNU2-11P-201ENST00000459191 187 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 RN7SL636P-201ENST00000497504 294 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 AC245166.1-201ENST00000521012 253 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 MIR548Z-201ENST00000584743 97 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 AC091932.4-201ENST00000623386 200 ntBASIC3.55□□□□□ -1.84
SH3RF1Q7Z6J0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 Y_RNA.190-201ENST00000363964 101 ntBASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 SNORA7.4-201ENST00000384249 137 ntBASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 SNORA80E-201ENST00000384744 137 ntBASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 RNU2-48P-201ENST00000410694 191 ntBASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 RPL32P35-201ENST00000415214 394 ntBASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 RNU6-667P-201ENST00000517186 102 ntBASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 CTSLP2-204ENST00000629029 392 ntBASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
SH3RF1Q7Z6J0 ICE2P2-201ENST00000483823 2787 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 RNU6-60P-201ENST00000364792 103 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 Y_RNA.426-201ENST00000384068 113 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 SNORA46-201ENST00000384762 135 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 MRPL35P3-201ENST00000421557 364 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 SNX2P2-201ENST00000424553 323 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 RNU2-35P-201ENST00000516446 142 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 MIR3618-201ENST00000580330 88 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 MIR4777-201ENST00000583710 86 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 AC087741.2-201ENST00000619415 172 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 AC093831.2-201ENST00000624393 3427 ntBASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SH3RF1Q7Z6J0 MAPK10-362ENST00000641864 4484 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 MIR342-201ENST00000362212 99 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 Y_RNA.360-201ENST00000365512 102 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 Y_RNA.620-201ENST00000411009 88 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 SRIP3-201ENST00000413200 219 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 EEF1A1P41-201ENST00000414667 207 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 AL035398.1-201ENST00000430869 322 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 SNRPGP14-201ENST00000435400 219 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 AC108938.1-201ENST00000451204 136 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 RN7SKP132-201ENST00000516001 208 ntBASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SH3RF1Q7Z6J0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms