Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 RNU2-19P-201ENST00000517288 84 ntBASIC2.56□□□□□ -2
RAPGEF3O95398 AP002004.2-201ENST00000531656 154 ntBASIC2.56□□□□□ -2
RAPGEF3O95398 AC084364.2-201ENST00000546924 395 ntBASIC2.56□□□□□ -2
RAPGEF3O95398 MIR5094-201ENST00000578766 85 ntBASIC2.56□□□□□ -2
RAPGEF3O95398 MIR4308-201ENST00000580634 81 ntBASIC2.56□□□□□ -2
RAPGEF3O95398 MIR6840-201ENST00000611937 71 ntBASIC2.56□□□□□ -2
RAPGEF3O95398 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
RAPGEF3O95398 Y_RNA.24-201ENST00000362508 103 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 Y_RNA.203-201ENST00000364106 102 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 RNU6-47P-201ENST00000383866 107 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 AL512604.1-201ENST00000404812 257 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 MIR5694-201ENST00000581190 76 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 FTX_2.1-201ENST00000618816 94 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 MIR6734-201ENST00000621166 68 ntBASIC2.55□□□□□ -2
RAPGEF3O95398 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
RAPGEF3O95398 SNORA7.1-201ENST00000363750 139 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 Y_RNA.233-201ENST00000364407 101 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 SNORA16.1-201ENST00000364597 132 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 RNU6-53P-201ENST00000365367 106 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 RNU6-969P-201ENST00000383900 105 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 Y_RNA.571-201ENST00000384753 98 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 RNA5SP450-201ENST00000411206 102 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 AC009310.1-201ENST00000414414 451 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 AC245047.4-201ENST00000433189 144 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 AL929325.1-201ENST00000603096 117 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 AL391903.3-201ENST00000612158 163 ntBASIC2.54□□□□□ -2
RAPGEF3O95398 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.54□□□□□ -2
RAPGEF3O95398 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
RAPGEF3O95398 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
RAPGEF3O95398 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
RAPGEF3O95398 RNU4-70P-201ENST00000384579 139 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 Y_RNA.555-201ENST00000384673 110 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 MIR616-201ENST00000385293 97 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.53□□□□□ -2
RAPGEF3O95398 RNA5SP501-201ENST00000410990 112 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.53□□□□□ -2
RAPGEF3O95398 AC233266.1-201ENST00000454518 96 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 AC055731.1-201ENST00000474387 401 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 RNVU1-2-201ENST00000516326 135 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 RNU6-1291P-201ENST00000516591 104 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 SUB1P4-201ENST00000566062 339 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 MIR4287-201ENST00000579398 78 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 AC242852.1-201ENST00000612151 96 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 AC244015.1-201ENST00000622301 99 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.53□□□□□ -2
RAPGEF3O95398 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
RAPGEF3O95398 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
RAPGEF3O95398 SNORA63D-201ENST00000364359 132 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 RNU4-10P-201ENST00000364383 140 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 RNU4-41P-201ENST00000364426 143 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 Y_RNA.267-201ENST00000364679 109 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 MT-TR-201ENST00000387439 65 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 RNU6-383P-201ENST00000410864 94 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 Y_RNA.621-201ENST00000411065 96 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 RN7SKP101-201ENST00000411376 320 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.52□□□□□ -2.01
RAPGEF3O95398 AC022217.4-201ENST00000604389 163 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 AC022709.1-201ENST00000615967 87 ntBASIC2.52□□□□□ -2.01
RAPGEF3O95398 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
RAPGEF3O95398 Y_RNA.229-201ENST00000364347 113 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 Y_RNA.270-201ENST00000364693 104 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 RNY3P5-201ENST00000384127 102 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 RNU6-950P-201ENST00000384651 107 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 AC245047.3-201ENST00000429428 127 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 RPS27P1-201ENST00000450552 247 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 RNU7-28P-201ENST00000516759 62 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 RNU2-56P-201ENST00000516826 190 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.51□□□□□ -2.01
RAPGEF3O95398 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.51□□□□□ -2.01
RAPGEF3O95398 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
RAPGEF3O95398 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
RAPGEF3O95398 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
RAPGEF3O95398 MIR96-201ENST00000362288 78 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 snoU2_19.4-201ENST00000364329 80 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 MIR520A-201ENST00000384862 85 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 MIR548I3-201ENST00000408378 149 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 MIR548I1-201ENST00000408810 149 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 AC023449.1-201ENST00000454464 154 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 AL049830.1-201ENST00000468034 425 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.5□□□□□ -2.01
RAPGEF3O95398 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.5□□□□□ -2.01
RAPGEF3O95398 SNORD53B-201ENST00000577887 78 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 MIR4421-201ENST00000578133 69 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 MIR4744-201ENST00000581563 82 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 JPX_2.1-201ENST00000614161 69 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 U6.106-201ENST00000636360 105 ntBASIC2.5□□□□□ -2.01
RAPGEF3O95398 SNORA1B-201ENST00000362535 133 ntBASIC2.49□□□□□ -2.01
RAPGEF3O95398 RNU6-1080P-201ENST00000383982 107 ntBASIC2.49□□□□□ -2.01
RAPGEF3O95398 RNU6-1228P-201ENST00000391014 107 ntBASIC2.49□□□□□ -2.01
RAPGEF3O95398 RNU6-1007P-201ENST00000516586 107 ntBASIC2.49□□□□□ -2.01
RAPGEF3O95398 AL021707.8-201ENST00000609428 183 ntBASIC2.49□□□□□ -2.01
RAPGEF3O95398 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
RAPGEF3O95398 RNU6-682P-201ENST00000363843 106 ntBASIC2.48□□□□□ -2.01
RAPGEF3O95398 Y_RNA.240-201ENST00000364469 95 ntBASIC2.48□□□□□ -2.01
RAPGEF3O95398 MIR17-201ENST00000385012 84 ntBASIC2.48□□□□□ -2.01
RAPGEF3O95398 RNA5SP109-201ENST00000391010 116 ntBASIC2.48□□□□□ -2.01
RAPGEF3O95398 MIR1278-201ENST00000408753 81 ntBASIC2.48□□□□□ -2.01
RAPGEF3O95398 RNA5SP233-201ENST00000459153 113 ntBASIC2.48□□□□□ -2.01
RAPGEF3O95398 Y_RNA.797-201ENST00000515977 94 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms