Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 RNU1-131P-201ENST00000458943 161 ntBASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 AC008885.1-201ENST00000514930 301 ntBASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 RNU7-25P-201ENST00000516544 62 ntBASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-1018P-201ENST00000516577 106 ntBASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 MIR2682-201ENST00000580305 110 ntBASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 AC104984.5-201ENST00000586878 94 ntBASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SH3RF1Q7Z6J0 AC008264.2-201ENST00000610193 3731 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 Y_RNA.37-201ENST00000362606 108 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 SNORA33-201ENST00000363664 130 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-776P-201ENST00000364403 104 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 snoU2-30.1-201ENST00000365012 70 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-1022P-201ENST00000365049 104 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-644P-201ENST00000391155 98 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 AC004941.2-201ENST00000427009 228 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 RNU7-80P-201ENST00000459562 61 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 RNU7-123P-201ENST00000515911 60 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 SNORA18.7-201ENST00000516910 131 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 SNORA48.11-201ENST00000517015 89 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 MIR338-201ENST00000636369 67 ntBASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.63□□□□□ -1.83
SH3RF1Q7Z6J0 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 MAPK10-322ENST00000641485 4530 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 Y_RNA.10-201ENST00000362371 110 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 SNORA1B-201ENST00000362535 133 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 RNU1-23P-201ENST00000363361 144 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 MIR515-2-201ENST00000384883 83 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 MIR515-1-201ENST00000384884 83 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 MIR95-201ENST00000385072 81 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 RNU2-63P-201ENST00000410792 194 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 AL159169.1-201ENST00000421119 127 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 AL445646.1-201ENST00000431784 216 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 AL356280.1-201ENST00000603614 379 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 GABRG2-229ENST00000641017 3628 ntBASIC3.62□□□□□ -1.83
SH3RF1Q7Z6J0 FAM35CP-201ENST00000554755 2470 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 MIR340-201ENST00000362125 95 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 MIR148B-201ENST00000362252 99 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 Y_RNA.437-201ENST00000384113 113 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 Y_RNA.454-201ENST00000384224 113 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 SNORA8-201ENST00000384574 139 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-1328P-201ENST00000410938 106 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 RNA5SP217-201ENST00000515959 91 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-162P-201ENST00000516228 103 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 AC022523.2-201ENST00000561045 150 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 MIR4305-201ENST00000583252 102 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 AC012531.4-201ENST00000616509 177 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 FAS-AS1.2-201ENST00000620386 170 ntBASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SH3RF1Q7Z6J0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 Y_RNA.351-201ENST00000365436 96 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 Y_RNA.547-201ENST00000384654 119 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-402P-201ENST00000410678 103 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 AC009238.1-201ENST00000442165 424 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 AC009237.6-201ENST00000446969 424 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 RNU7-170P-201ENST00000459303 61 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 RPS27P29-201ENST00000463110 252 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 RNA5SP356-201ENST00000515972 94 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 UBL5P2-201ENST00000583788 219 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 AL353149.1-201ENST00000610667 244 ntBASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
SH3RF1Q7Z6J0 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-170P-201ENST00000362832 104 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 SNORD115-13-201ENST00000363358 82 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 SNORD115-16-201ENST00000363887 82 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-219P-201ENST00000364728 107 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 SNORD115-1-201ENST00000364961 82 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 CD24P4-201ENST00000382840 243 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 RNU6-938P-201ENST00000411285 103 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 SEM1P1-201ENST00000506694 209 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 SNORD36C-201ENST00000516733 66 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 AL355297.2-201ENST00000604792 129 ntBASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SH3RF1Q7Z6J0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SH3RF1Q7Z6J0 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
SH3RF1Q7Z6J0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.58□□□□□ -1.84
SH3RF1Q7Z6J0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms