Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HSPE1P13-201ENST00000451143 297 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 RNU6-1143P-201ENST00000516125 104 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 RNU6-341P-201ENST00000516973 96 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 SUMO2P16-201ENST00000519475 264 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 AL512605.2-201ENST00000592972 256 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 AC136443.5-201ENST00000603741 370 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.30-201ENST00000362572 97 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 U8.7-201ENST00000364940 136 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU6-290P-201ENST00000365212 101 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNA5SP259-201ENST00000365541 109 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU6-662P-201ENST00000384253 104 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU6-950P-201ENST00000384651 107 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU6-997P-201ENST00000384725 107 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 SNORA53-201ENST00000391141 249 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU1-78P-201ENST00000391248 165 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 MTCO2P33-201ENST00000402100 465 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 AL034345.1-201ENST00000407768 123 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU2-14P-201ENST00000411053 191 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 MTCO1P5-201ENST00000433573 344 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 JTBP1-201ENST00000441314 247 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU1-98P-201ENST00000458992 160 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 HMGN1P10-201ENST00000474557 553 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 RNU6-191P-201ENST00000516295 94 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 AC019176.1-201ENST00000518519 225 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 MIR4778-201ENST00000577635 80 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 MIR4719-201ENST00000585233 84 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 POLR3GP1-201ENST00000594073 261 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 AC037487.3-201ENST00000606668 112 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 MIR8081-201ENST00000611533 95 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 AC106754.2-201ENST00000623006 233 ntBASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.44□□□□□ -2.18
PDLIM3Q53GG5 SNORD114-7-201ENST00000362520 77 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.176-201ENST00000363815 109 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.276-201ENST00000364732 109 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.310-201ENST00000365063 113 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.354-201ENST00000365448 111 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.376-201ENST00000365638 108 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.574-201ENST00000384766 95 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 CALM2P4-201ENST00000430810 426 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 FTH1P12-201ENST00000432137 551 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 TRBVB-201ENST00000477100 408 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 AC092991.1-201ENST00000477176 376 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 RPL23AP54-201ENST00000495129 419 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 RNU2-31P-201ENST00000516954 155 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 RNU6-250P-201ENST00000516958 103 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 RNU6-1116P-201ENST00000517269 99 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 AP002004.2-201ENST00000531656 154 ntBASIC1.43□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.47-201ENST00000362697 108 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 RNU4-41P-201ENST00000364426 143 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.456-201ENST00000384232 111 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.461-201ENST00000384263 103 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 SNORA12.1-201ENST00000390873 148 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 AC093850.1-201ENST00000454121 251 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 AC099513.1-201ENST00000490423 301 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 AC024405.2-202ENST00000532731 184 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 SNORD3E-202ENST00000627253 216 ntBASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
PDLIM3Q53GG5 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.368-201ENST00000365547 113 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.483-201ENST00000384380 101 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 RNU6-763P-201ENST00000390865 106 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 SNORA26.5-201ENST00000391215 123 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 U8.16-201ENST00000391279 133 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 MIR1302-6-201ENST00000408466 90 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 MIR1278-201ENST00000408753 81 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 HMGN1P33-201ENST00000432945 451 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 PGBD4P5-201ENST00000445958 426 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 RNU7-141P-201ENST00000459304 62 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 AC091959.1-201ENST00000495857 238 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 RNA5SP61-201ENST00000516453 100 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 RNA5SP168-201ENST00000516642 112 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 MIR502-201ENST00000606349 86 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 SNORA28-201ENST00000606769 126 ntBASIC1.41□□□□□ -2.18
PDLIM3Q53GG5 AL161722.3-201ENST00000605789 2983 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 RNU6-801P-201ENST00000364087 105 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.237-201ENST00000364439 102 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1105P-201ENST00000384774 107 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 MIR513A1-201ENST00000385138 129 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 MT-TW-201ENST00000387382 68 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1203P-201ENST00000410703 110 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 PIGPP3-201ENST00000425307 415 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 BTF3P11-201ENST00000426582 477 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 AC104332.1-201ENST00000440471 797 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 Z98949.2-201ENST00000440996 144 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 U8.19-201ENST00000459095 133 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 RNU7-12P-201ENST00000516030 62 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1045P-201ENST00000516321 107 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1338P-201ENST00000516328 91 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 AL117187.1-201ENST00000555482 181 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 SNORA77B-201ENST00000578179 125 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 MIR4255-201ENST00000579351 72 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms