Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.673-201ENST00000516306 88 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AP002004.2-201ENST00000531656 154 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC127455.1-201ENST00000565496 145 ntBASIC1.57□□□□□ -2.16
MSH3P20585 SNORD53B-201ENST00000577887 78 ntBASIC1.57□□□□□ -2.16
MSH3P20585 MIR4524B-201ENST00000581569 115 ntBASIC1.57□□□□□ -2.16
MSH3P20585 MIR4282-201ENST00000583613 67 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AP000942.4-201ENST00000604811 241 ntBASIC1.57□□□□□ -2.16
MSH3P20585 BX284668.6-201ENST00000606899 438 ntBASIC1.57□□□□□ -2.16
MSH3P20585 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC242852.1-201ENST00000612151 96 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC013791.1-201ENST00000616619 62 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC244015.1-201ENST00000622301 99 ntBASIC1.57□□□□□ -2.16
MSH3P20585 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.56□□□□□ -2.16
MSH3P20585 Y_RNA.54-201ENST00000362766 105 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-211P-201ENST00000384047 107 ntBASIC1.56□□□□□ -2.16
MSH3P20585 Y_RNA.539-201ENST00000384635 107 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-360P-201ENST00000390944 104 ntBASIC1.56□□□□□ -2.16
MSH3P20585 MIR934-201ENST00000401241 83 ntBASIC1.56□□□□□ -2.16
MSH3P20585 SNORA36B-201ENST00000410438 131 ntBASIC1.56□□□□□ -2.16
MSH3P20585 BTF3P11-201ENST00000426582 477 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-1023P-201ENST00000516137 106 ntBASIC1.56□□□□□ -2.16
MSH3P20585 RNU6-970P-201ENST00000516312 107 ntBASIC1.56□□□□□ -2.16
MSH3P20585 MIR5692C2-201ENST00000577959 77 ntBASIC1.56□□□□□ -2.16
MSH3P20585 MIR4285-201ENST00000581001 85 ntBASIC1.56□□□□□ -2.16
MSH3P20585 BX248123.2-201ENST00000606318 124 ntBASIC1.56□□□□□ -2.16
MSH3P20585 SNORD27-201ENST00000363981 72 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RNU6-1080P-201ENST00000383982 107 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RNU6-439P-201ENST00000384188 106 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RNU6-950P-201ENST00000384651 107 ntBASIC1.55□□□□□ -2.16
MSH3P20585 SNORA12.1-201ENST00000390873 148 ntBASIC1.55□□□□□ -2.16
MSH3P20585 Y_RNA.590-201ENST00000410140 107 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.55□□□□□ -2.16
MSH3P20585 snoU13.27-201ENST00000459278 104 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AL049830.1-201ENST00000468034 425 ntBASIC1.55□□□□□ -2.16
MSH3P20585 RPL23AP54-201ENST00000495129 419 ntBASIC1.55□□□□□ -2.16
MSH3P20585 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.55□□□□□ -2.16
MSH3P20585 MIR3198-2-201ENST00000577868 80 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AC005357.1-201ENST00000588399 301 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AL929325.1-201ENST00000603096 117 ntBASIC1.55□□□□□ -2.16
MSH3P20585 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AL353997.5-201ENST00000618886 171 ntBASIC1.55□□□□□ -2.16
MSH3P20585 AP000648.3-201ENST00000623539 4507 ntBASIC1.55□□□□□ -2.16
MSH3P20585 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
MSH3P20585 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-661P-201ENST00000362409 107 ntBASIC1.54□□□□□ -2.16
MSH3P20585 Y_RNA.60-201ENST00000362831 98 ntBASIC1.54□□□□□ -2.16
MSH3P20585 Y_RNA.76-201ENST00000362931 109 ntBASIC1.54□□□□□ -2.16
MSH3P20585 Y_RNA.188-201ENST00000363952 111 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-144P-201ENST00000383951 107 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-1031P-201ENST00000384773 107 ntBASIC1.54□□□□□ -2.16
MSH3P20585 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RN7SKP200-201ENST00000410564 320 ntBASIC1.54□□□□□ -2.16
MSH3P20585 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH3P20585 RNU7-28P-201ENST00000516759 62 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU2-56P-201ENST00000516826 190 ntBASIC1.54□□□□□ -2.16
MSH3P20585 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.54□□□□□ -2.16
MSH3P20585 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH3P20585 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.54□□□□□ -2.16
MSH3P20585 RNU6-1205P-201ENST00000363625 106 ntBASIC1.53□□□□□ -2.16
MSH3P20585 RNU6-674P-201ENST00000363831 107 ntBASIC1.53□□□□□ -2.16
MSH3P20585 SNORA20.1-201ENST00000364790 130 ntBASIC1.53□□□□□ -2.16
MSH3P20585 MIR517C-201ENST00000385103 95 ntBASIC1.53□□□□□ -2.16
MSH3P20585 SNORA67.5-201ENST00000391036 107 ntBASIC1.53□□□□□ -2.16
MSH3P20585 RNA5SP482-201ENST00000391269 118 ntBASIC1.53□□□□□ -2.16
MSH3P20585 Y_RNA.621-201ENST00000411065 96 ntBASIC1.53□□□□□ -2.16
MSH3P20585 COX6CP10-201ENST00000416832 224 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.53□□□□□ -2.16
MSH3P20585 AC023790.1-201ENST00000482174 347 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.53□□□□□ -2.16
MSH3P20585 Y_RNA.679-201ENST00000516416 91 ntBASIC1.53□□□□□ -2.16
MSH3P20585 SNORA44.1-201ENST00000517031 108 ntBASIC1.53□□□□□ -2.16
MSH3P20585 RNU6-1271P-201ENST00000517049 105 ntBASIC1.53□□□□□ -2.16
MSH3P20585 MIR4709-201ENST00000577272 72 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC006006.1-201ENST00000603082 144 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC011921.3-201ENST00000605540 361 ntBASIC1.53□□□□□ -2.16
MSH3P20585 AC073349.3-201ENST00000617616 186 ntBASIC1.53□□□□□ -2.16
MSH3P20585 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.53□□□□□ -2.16
MSH3P20585 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
MSH3P20585 MIR424-201ENST00000362227 98 ntBASIC1.52□□□□□ -2.17
MSH3P20585 RNU4-41P-201ENST00000364426 143 ntBASIC1.52□□□□□ -2.17
MSH3P20585 Y_RNA.265-201ENST00000364677 108 ntBASIC1.52□□□□□ -2.17
MSH3P20585 Y_RNA.489-201ENST00000384410 101 ntBASIC1.52□□□□□ -2.17
MSH3P20585 MIR30A-201ENST00000385092 71 ntBASIC1.52□□□□□ -2.17
MSH3P20585 SNORA67.6-201ENST00000391093 99 ntBASIC1.52□□□□□ -2.17
MSH3P20585 Z98949.2-201ENST00000440996 144 ntBASIC1.52□□□□□ -2.17
MSH3P20585 STAG3L5P-204ENST00000443759 179 ntBASIC1.52□□□□□ -2.17
MSH3P20585 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH3P20585 Y_RNA.638-201ENST00000459374 113 ntBASIC1.52□□□□□ -2.17
MSH3P20585 RNU6-437P-201ENST00000459408 95 ntBASIC1.52□□□□□ -2.17
MSH3P20585 OR9P1P-201ENST00000496431 281 ntBASIC1.52□□□□□ -2.17
MSH3P20585 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH3P20585 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.52□□□□□ -2.17
MSH3P20585 SNORD116-28-201ENST00000516123 91 ntBASIC1.52□□□□□ -2.17
MSH3P20585 RNU6-111P-201ENST00000517179 105 ntBASIC1.52□□□□□ -2.17
MSH3P20585 SNORA28-201ENST00000606769 126 ntBASIC1.52□□□□□ -2.17
MSH3P20585 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH3P20585 RNA5SP99-201ENST00000364020 114 ntBASIC1.51□□□□□ -2.17
MSH3P20585 Y_RNA.203-201ENST00000364106 102 ntBASIC1.51□□□□□ -2.17
MSH3P20585 Y_RNA.269-201ENST00000364685 89 ntBASIC1.51□□□□□ -2.17
MSH3P20585 Y_RNA.304-201ENST00000365011 112 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms