Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 AL512604.1-201ENST00000404812 257 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 RNU6-383P-201ENST00000410864 94 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 RNA5SP100-201ENST00000410903 110 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 RNA5SP59-201ENST00000410922 110 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 RNU7-28P-201ENST00000516759 62 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.6□□□□□ -1.99
CCDC85CA6NKD9 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 RNU6-682P-201ENST00000363843 106 ntBASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 Y_RNA.253-201ENST00000364562 112 ntBASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 Y_RNA.267-201ENST00000364679 109 ntBASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 SNORD11-201ENST00000459124 84 ntBASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 AC107393.1-201ENST00000512403 346 ntBASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 MIR8054-201ENST00000620877 86 ntBASIC2.59□□□□□ -1.99
CCDC85CA6NKD9 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
CCDC85CA6NKD9 Y_RNA.240-201ENST00000364469 95 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 RNU6-1080P-201ENST00000383982 107 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 RNU6-950P-201ENST00000384651 107 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 Y_RNA.572-201ENST00000384757 98 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 RPL39P40-201ENST00000445481 146 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 AC233266.1-201ENST00000454518 96 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 HMGN1P7-201ENST00000491722 313 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 SCARNA8-201ENST00000515924 131 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.58□□□□□ -2
CCDC85CA6NKD9 MIR4762-201ENST00000585261 75 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 AC242852.1-201ENST00000612151 96 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 AC244015.1-201ENST00000622301 99 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 U6.106-201ENST00000636360 105 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 FO624990.1-201ENST00000636373 85 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 AC080100.1-201ENST00000624239 5356 ntBASIC2.58□□□□□ -2
CCDC85CA6NKD9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.57□□□□□ -2
CCDC85CA6NKD9 Y_RNA.75-201ENST00000362927 97 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 Y_RNA.191-201ENST00000363972 113 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 RNU4-41P-201ENST00000364426 143 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 U8.5-201ENST00000364528 136 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 RNU4-70P-201ENST00000384579 139 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 RNU6-1228P-201ENST00000391014 107 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 RNU4-62P-201ENST00000410125 130 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 AL049830.1-201ENST00000468034 425 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 RN7SKP43-201ENST00000516173 320 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 SNORA9.3-201ENST00000516383 129 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 RNU2-56P-201ENST00000516826 190 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 RNA5SP437-201ENST00000517249 129 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 MIR4744-201ENST00000581563 82 ntBASIC2.57□□□□□ -2
CCDC85CA6NKD9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC85CA6NKD9 RNU6-661P-201ENST00000362409 107 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 RNU6-1209P-201ENST00000363655 107 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 SNORA16B-201ENST00000364674 135 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 RNA5SP482-201ENST00000391269 118 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 PCNPP3-201ENST00000393579 471 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 AC019129.1-201ENST00000403786 261 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 AC009310.1-201ENST00000414414 451 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 AL158823.1-201ENST00000418441 478 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.56□□□□□ -2
CCDC85CA6NKD9 SNORA31.10-201ENST00000516482 106 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 RNA5SP481-201ENST00000516814 122 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 MRPS18CP4-201ENST00000535821 231 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 AC087685.1-201ENST00000587507 141 ntBASIC2.56□□□□□ -2
CCDC85CA6NKD9 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC85CA6NKD9 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.55□□□□□ -2
CCDC85CA6NKD9 Y_RNA.36-201ENST00000362602 112 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 Y_RNA.180-201ENST00000363867 113 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 RNA5SP456-201ENST00000364002 114 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 RNU6-886P-201ENST00000384319 105 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 MIR221-201ENST00000385135 110 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 RNU6-440P-201ENST00000390882 105 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 RNU2-2P-201ENST00000410396 191 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.55□□□□□ -2
CCDC85CA6NKD9 RPL23AP63-201ENST00000498752 471 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 AC022559.1-201ENST00000520905 205 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 AC004486.1-201ENST00000546846 233 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 MIR4452-201ENST00000583004 71 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 RNU2-4P-201ENST00000606190 192 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.55□□□□□ -2
CCDC85CA6NKD9 MIR203B-201ENST00000636080 86 ntBASIC2.55□□□□□ -2
CCDC85CA6NKD9 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.54□□□□□ -2
CCDC85CA6NKD9 RNU6-275P-201ENST00000364910 107 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 RNU6-578P-201ENST00000390980 103 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 AP004217.1-201ENST00000480579 346 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 RNU6-453P-201ENST00000516819 85 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.54□□□□□ -2
CCDC85CA6NKD9 RPL23AP91-201ENST00000569211 455 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 SNORA28-201ENST00000606769 126 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 AC108706.1-201ENST00000611053 297 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 JPX_2.1-201ENST00000614161 69 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 AL591926.4-201ENST00000616895 298 ntBASIC2.54□□□□□ -2
CCDC85CA6NKD9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
CCDC85CA6NKD9 Y_RNA.23-201ENST00000362496 106 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 RNU6-312P-201ENST00000364629 107 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 Y_RNA.412-201ENST00000384001 104 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 SNORA12.1-201ENST00000390873 148 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 RNA5SP210-201ENST00000391034 120 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 RNA5SP212-201ENST00000391223 107 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 RN7SKP200-201ENST00000410564 320 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 Y_RNA.621-201ENST00000411065 96 ntBASIC2.53□□□□□ -2
CCDC85CA6NKD9 RNU2-55P-201ENST00000411146 174 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms