Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 MCCD1P1-208ENST00000445732 328 ntBASIC19.74■□□□□ 0.75
USP3Q9Y6I4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 RCC2P3-201ENST00000418112 1537 ntBASIC19.74■□□□□ 0.75
USP3Q9Y6I4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.74■□□□□ 0.75
USP3Q9Y6I4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 AC068587.9-201ENST00000641814 219 ntBASIC19.73■□□□□ 0.75
USP3Q9Y6I4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP3Q9Y6I4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 AC117947.1-201ENST00000427448 529 ntBASIC19.72■□□□□ 0.75
USP3Q9Y6I4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 COX11P1-201ENST00000489116 835 ntBASIC19.72■□□□□ 0.75
USP3Q9Y6I4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 NEK4P2-201ENST00000580004 1012 ntBASIC19.72■□□□□ 0.75
USP3Q9Y6I4 MIR3180-5-201ENST00000583743 153 ntBASIC19.72■□□□□ 0.75
USP3Q9Y6I4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 AC006333.2-201ENST00000607957 2099 ntBASIC19.72■□□□□ 0.75
USP3Q9Y6I4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
USP3Q9Y6I4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 AC139887.4-201ENST00000607877 719 ntBASIC19.71■□□□□ 0.75
USP3Q9Y6I4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 AC008556.1-201ENST00000610908 2040 ntBASIC19.71■□□□□ 0.75
USP3Q9Y6I4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
USP3Q9Y6I4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms