Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL391422.3-201ENST00000603791 2761 ntBASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 AL031008.1-201ENST00000619963 541 ntBASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMD1Q9UGP4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 PCDHAC2-203ENST00000615316 3011 ntBASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 AC004263.2-201ENST00000617183 678 ntBASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 AL162741.1-201ENST00000565563 1558 ntBASIC19.66■□□□□ 0.74
LIMD1Q9UGP4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 TSPY19P-201ENST00000418461 509 ntBASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 TSPY18P-201ENST00000441642 509 ntBASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 AL160237.2-201ENST00000556165 472 ntBASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 AC104692.2-201ENST00000603054 253 ntBASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 KRT18P1-202ENST00000452408 1331 ntBASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMD1Q9UGP4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 CHCHD2P8-201ENST00000429873 447 ntBASIC19.64■□□□□ 0.73
LIMD1Q9UGP4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms