Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 GPAT2P1-201ENST00000444924 1672 ntBASIC18.97■□□□□ 0.63
DKK3Q9UBP4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
DKK3Q9UBP4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 LETM1P2-201ENST00000597330 2178 ntBASIC18.96■□□□□ 0.63
DKK3Q9UBP4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 COX11P1-201ENST00000489116 835 ntBASIC18.96■□□□□ 0.63
DKK3Q9UBP4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 AL031432.5-201ENST00000641059 760 ntBASIC18.96■□□□□ 0.63
DKK3Q9UBP4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 AL020996.1-203ENST00000536896 2307 ntBASIC18.96■□□□□ 0.63
DKK3Q9UBP4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
DKK3Q9UBP4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 DUX4L26-201ENST00000489078 1255 ntBASIC18.95■□□□□ 0.62
DKK3Q9UBP4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 NEK4P2-201ENST00000580004 1012 ntBASIC18.95■□□□□ 0.62
DKK3Q9UBP4 AC010331.1-201ENST00000611423 582 ntBASIC18.95■□□□□ 0.62
DKK3Q9UBP4 CR769767.2-201ENST00000622735 460 ntBASIC18.95■□□□□ 0.62
DKK3Q9UBP4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 AC005332.7-201ENST00000614046 2005 ntBASIC18.95■□□□□ 0.62
DKK3Q9UBP4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.95■□□□□ 0.62
DKK3Q9UBP4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AL512353.2-201ENST00000448759 1962 ntBASIC18.94■□□□□ 0.62
DKK3Q9UBP4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AP000523.1-201ENST00000398242 1049 ntBASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AC117947.1-201ENST00000427448 529 ntBASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 MCCD1P1-208ENST00000445732 328 ntBASIC18.94■□□□□ 0.62
DKK3Q9UBP4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AL049597.2-201ENST00000565575 961 ntBASIC18.94■□□□□ 0.62
DKK3Q9UBP4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DKK3Q9UBP4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms