Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 PKD1P6-201ENST00000343738 4769 ntBASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 LINC01521-201ENST00000504184 1943 ntBASIC24.9■■□□□ 1.58
USHBP1Q8N6Y0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 AL845331.1-201ENST00000424978 1190 ntBASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
USHBP1Q8N6Y0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
USHBP1Q8N6Y0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 KRT18P23-201ENST00000435622 1283 ntBASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 MPI-205ENST00000562606 1052 ntTSL 3 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 AC093525.10-201ENST00000625130 1569 ntBASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC24.88■■□□□ 1.57
USHBP1Q8N6Y0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 MIR662-201ENST00000384847 95 ntBASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 TSPY22P-201ENST00000427496 604 ntBASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 KRT8P26-201ENST00000534154 1276 ntBASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USHBP1Q8N6Y0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USHBP1Q8N6Y0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms