Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 TUBB8P6-201ENST00000436895 1288 ntBASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 AL359075.1-203ENST00000462729 1002 ntBASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SH3RF1Q7Z6J0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SH3RF1Q7Z6J0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.64■■□□□ 1.06
SH3RF1Q7Z6J0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.06
SH3RF1Q7Z6J0 AC096733.2-201ENST00000609937 1394 ntBASIC21.64■■□□□ 1.06
SH3RF1Q7Z6J0 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SH3RF1Q7Z6J0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 AC005332.1-201ENST00000577698 1310 ntBASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 AC004951.3-201ENST00000418645 1148 ntBASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 SLC25A1P2-201ENST00000430693 912 ntBASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 AC010653.2-201ENST00000623505 997 ntBASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.64■■□□□ 1.05
SH3RF1Q7Z6J0 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 AC092338.2-201ENST00000568827 1415 ntBASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 AL671277.2-201ENST00000458060 996 ntBASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 AC116407.4-201ENST00000623319 1061 ntBASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.63■■□□□ 1.05
SH3RF1Q7Z6J0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.62■■□□□ 1.05
SH3RF1Q7Z6J0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms