Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.62■□□□□ 0.73
HMGA1P17096 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.62■□□□□ 0.73
HMGA1P17096 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGA1P17096 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.62■□□□□ 0.73
HMGA1P17096 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
HMGA1P17096 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGA1P17096 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGA1P17096 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
HMGA1P17096 AC007952.6-201ENST00000573168 2673 ntBASIC19.61■□□□□ 0.73
HMGA1P17096 AC003957.1-201ENST00000625108 2673 ntBASIC19.61■□□□□ 0.73
HMGA1P17096 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
HMGA1P17096 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGA1P17096 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HMGA1P17096 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGA1P17096 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGA1P17096 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGA1P17096 AC079602.3-201ENST00000623931 403 ntBASIC19.61■□□□□ 0.73
HMGA1P17096 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGA1P17096 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGA1P17096 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGA1P17096 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HMGA1P17096 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGA1P17096 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HMGA1P17096 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGA1P17096 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HMGA1P17096 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 MIR564-202ENST00000385049 94 ntBASIC19.6■□□□□ 0.73
HMGA1P17096 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGA1P17096 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HMGA1P17096 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.6■□□□□ 0.73
HMGA1P17096 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGA1P17096 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.6■□□□□ 0.73
HMGA1P17096 AL157888.1-201ENST00000631930 593 ntBASIC19.6■□□□□ 0.73
HMGA1P17096 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
HMGA1P17096 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
HMGA1P17096 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGA1P17096 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGA1P17096 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGA1P17096 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGA1P17096 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGA1P17096 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGA1P17096 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGA1P17096 MIR3917-201ENST00000580971 93 ntBASIC19.59■□□□□ 0.73
HMGA1P17096 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGA1P17096 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HMGA1P17096 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGA1P17096 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGA1P17096 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGA1P17096 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HMGA1P17096 HOXB1-202ENST00000577092 1414 ntBASIC19.59■□□□□ 0.73
HMGA1P17096 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGA1P17096 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.58■□□□□ 0.73
HMGA1P17096 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGA1P17096 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
HMGA1P17096 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGA1P17096 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.58■□□□□ 0.73
HMGA1P17096 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.73
HMGA1P17096 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGA1P17096 KRT18P23-201ENST00000435622 1283 ntBASIC19.58■□□□□ 0.72
HMGA1P17096 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGA1P17096 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.58■□□□□ 0.72
HMGA1P17096 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.58■□□□□ 0.72
HMGA1P17096 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGA1P17096 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.58■□□□□ 0.72
HMGA1P17096 AC093458.2-201ENST00000623150 629 ntBASIC19.58■□□□□ 0.72
HMGA1P17096 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
HMGA1P17096 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGA1P17096 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 KRT8P7-201ENST00000533003 1432 ntBASIC19.58■□□□□ 0.72
HMGA1P17096 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.58■□□□□ 0.72
HMGA1P17096 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGA1P17096 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGA1P17096 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGA1P17096 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGA1P17096 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms