Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 AL591424.1-201ENST00000442569 1213 ntBASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 BNIP3P18-201ENST00000593976 575 ntBASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A6A6NMZ7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 GPX1P2-201ENST00000429271 606 ntBASIC17■□□□□ 0.31
COL6A6A6NMZ7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17■□□□□ 0.31
COL6A6A6NMZ7 AC008608.2-201ENST00000606089 416 ntBASIC17■□□□□ 0.31
COL6A6A6NMZ7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A6A6NMZ7 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 AC211486.1-202ENST00000416371 468 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 NUS1P2-201ENST00000417358 873 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 HNRNPDP1-201ENST00000439535 754 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 AC211476.1-201ENST00000503899 468 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 MED15P5-201ENST00000423150 992 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 CYMP-203ENST00000474680 1263 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 AC112497.1-201ENST00000624824 639 ntBASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
COL6A6A6NMZ7 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A6A6NMZ7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms