Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNA5SP482-201ENST00000391269 118 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 PCNPP3-201ENST00000393579 471 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 AC245047.4-201ENST00000433189 144 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 SCARNA8-201ENST00000515924 131 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 AL049861.1-201ENST00000603130 150 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 AL021707.8-201ENST00000609428 183 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.01
TRIM39Q9HCM9 MIR144-201ENST00000384886 86 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 MT-TT-201ENST00000387460 66 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 SNORD23.1-201ENST00000408212 104 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 MIR1278-201ENST00000408753 81 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 RN7SKP200-201ENST00000410564 320 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 RNU2-55P-201ENST00000411146 174 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 RNA5SP450-201ENST00000411206 102 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 AL513328.1-201ENST00000446460 224 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 SNORA31.11-201ENST00000516528 139 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 AC087685.1-201ENST00000587507 141 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 uc_338.4-201ENST00000616635 176 ntBASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.46□□□□□ -2.02
TRIM39Q9HCM9 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 MIR449A-201ENST00000362113 91 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 MIR126-201ENST00000362291 85 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 RNU6-131P-201ENST00000391144 107 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 AL359511.1-201ENST00000402970 211 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 SNORA11.2-201ENST00000408318 127 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 RN7SKP51-201ENST00000410781 304 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 RPS27P1-201ENST00000450552 247 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 RNA5SP481-201ENST00000516814 122 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 RNA5SP402-201ENST00000517148 110 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 RNU2-19P-201ENST00000517288 84 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 SUB1P4-201ENST00000566062 339 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 MIR4662B-201ENST00000579498 81 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 MIR4431-201ENST00000579990 94 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 MIR4513-201ENST00000581077 86 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 MIR203B-201ENST00000636080 86 ntBASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
TRIM39Q9HCM9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 SNORA63D-201ENST00000364359 132 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 MIR15B-201ENST00000385045 98 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 RNU6-440P-201ENST00000390882 105 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 SNORA26-201ENST00000391286 122 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 SNORD11-201ENST00000459124 84 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 AC074198.2-201ENST00000508153 258 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 AL591926.4-201ENST00000616895 298 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 MIR8054-201ENST00000620877 86 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 AC012640.5-201ENST00000623897 319 ntBASIC2.44□□□□□ -2.02
TRIM39Q9HCM9 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 SNORD68-201ENST00000363214 84 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 Y_RNA.441-201ENST00000384123 112 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 MIR802-201ENST00000390235 94 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 MLLT10P1-201ENST00000418346 262 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 AC011753.1-201ENST00000451001 220 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 OR9P1P-201ENST00000496431 281 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 AC107027.2-201ENST00000512197 115 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 RNU6-1299P-201ENST00000516316 100 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 AL137847.3-201ENST00000611521 109 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.43□□□□□ -2.02
TRIM39Q9HCM9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 RNU4-82P-201ENST00000362443 140 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 Y_RNA.432-201ENST00000384087 111 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 SNORA67.4-201ENST00000384688 142 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 AL034345.1-201ENST00000407768 123 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 RNU6-1135P-201ENST00000411083 103 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 SEPT7P4-201ENST00000437076 306 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 AL606517.2-201ENST00000442855 241 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 STAG3L5P-204ENST00000443759 179 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 AC055731.1-201ENST00000474387 401 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 RPL23AP94-201ENST00000512518 302 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 AC091544.4-201ENST00000555268 342 ntBASIC2.42□□□□□ -2.02
TRIM39Q9HCM9 RNU6-112P-201ENST00000363599 104 ntBASIC2.41□□□□□ -2.02
TRIM39Q9HCM9 RNU4-43P-201ENST00000410628 137 ntBASIC2.41□□□□□ -2.02
TRIM39Q9HCM9 Y_RNA.622-201ENST00000411091 108 ntBASIC2.41□□□□□ -2.02
TRIM39Q9HCM9 SNORD77.4-201ENST00000516158 81 ntBASIC2.41□□□□□ -2.02
TRIM39Q9HCM9 RNU6-1212P-201ENST00000517023 104 ntBASIC2.41□□□□□ -2.02
TRIM39Q9HCM9 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.41□□□□□ -2.02
TRIM39Q9HCM9 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.41□□□□□ -2.02
TRIM39Q9HCM9 AC008555.8-201ENST00000623602 2168 ntBASIC2.4□□□□□ -2.02
TRIM39Q9HCM9 RNU6-1138P-201ENST00000365359 106 ntBASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 RNU6-643P-201ENST00000384018 107 ntBASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 SNORA80E-201ENST00000384744 137 ntBASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 FTH1P12-201ENST00000432137 551 ntBASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 RPS12P2-201ENST00000439728 269 ntBASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP82-201ENST00000516707 92 ntBASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 RNU7-149P-201ENST00000516739 59 ntBASIC2.4□□□□□ -2.03
TRIM39Q9HCM9 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 AC016717.2-201ENST00000609089 5141 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 RNU6-1084P-201ENST00000362498 107 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 SNORD45.3-201ENST00000363836 72 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 RNU4-84P-201ENST00000364200 139 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms